Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB3X07_RS06140 Genome accession   NZ_CP162488
Coordinates   1434863..1436251 (-) Length   462 a.a.
NCBI ID   WP_369943557.1    Uniprot ID   -
Organism   Xanthomonas medicagonis strain DAR 35659     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1425397..1434624 1434863..1436251 flank 239


Gene organization within MGE regions


Location: 1425397..1436251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X07_RS06090 (AB3X07_06085) - 1425397..1426557 (+) 1161 WP_369943547.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  AB3X07_RS06095 (AB3X07_06090) - 1426543..1427778 (-) 1236 WP_369943548.1 hypothetical protein -
  AB3X07_RS06100 (AB3X07_06095) - 1427778..1428473 (-) 696 WP_369943549.1 class I SAM-dependent DNA methyltransferase -
  AB3X07_RS06105 (AB3X07_06100) - 1428470..1429390 (-) 921 WP_369943550.1 hypothetical protein -
  AB3X07_RS06110 (AB3X07_06105) - 1429383..1430531 (-) 1149 WP_369943551.1 glycosyltransferase -
  AB3X07_RS06115 (AB3X07_06110) - 1430528..1431253 (-) 726 WP_369943552.1 class I SAM-dependent methyltransferase -
  AB3X07_RS06120 (AB3X07_06115) - 1431255..1432112 (-) 858 WP_369943553.1 glycosyltransferase family 2 protein -
  AB3X07_RS06125 (AB3X07_06120) pilB 1432264..1434003 (+) 1740 WP_369943554.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AB3X07_RS06130 (AB3X07_06125) - 1433990..1434325 (-) 336 WP_369943555.1 addiction module antidote protein -
  AB3X07_RS06135 (AB3X07_06130) - 1434322..1434624 (-) 303 WP_369943556.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AB3X07_RS06140 (AB3X07_06135) pilR 1434863..1436251 (-) 1389 WP_369943557.1 sigma-54-dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49875.35 Da        Isoelectric Point: 6.5831

>NTDB_id=1026431 AB3X07_RS06140 WP_369943557.1 1434863..1436251(-) (pilR) [Xanthomonas medicagonis strain DAR 35659]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNSERPAPPAPPPEQASRLLGASTAMDALRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHRKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGASVEVPTDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRITPLLSPSALDALNRYPFPGNVRELENILERALAMAEDDQIGAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1026431 AB3X07_RS06140 WP_369943557.1 1434863..1436251(-) (pilR) [Xanthomonas medicagonis strain DAR 35659]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGATATCCGCGAGTTGCTGGTGCTGACCTTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCGGCCAACCTGGCAGAGGCCCGCGAACTGCTGGCCAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAAATCGCCAAGCACTACCCGCGCACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAACAGCGAACGCCCCGCGCCGCCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCGACCGCGATGGACGCACTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTGGGCGAGTCCGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACC
GCAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTTCTGGAC
GAGGTGGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGGTCGAAGTTCCGACCGACGTGCGCATCCTTTCGGCTACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGGATCACCCCGCTGCTGTCGCCATCGGCGCTGGA
CGCATTGAACCGCTACCCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCGGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCCCCGGCG
CTACCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAGGAGAATCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47

Multiple sequence alignment