Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3X10_RS16015 Genome accession   NZ_CP162487
Coordinates   3807582..3808967 (-) Length   461 a.a.
NCBI ID   WP_369976264.1    Uniprot ID   -
Organism   Xanthomonas bundabergensis strain DAR 80977     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3802582..3813967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3X10_RS16000 (AB3X10_15990) - 3804081..3805382 (+) 1302 WP_369976261.1 histidine-type phosphatase -
  AB3X10_RS16005 (AB3X10_15995) - 3805495..3806799 (+) 1305 WP_369976262.1 jacalin-like lectin -
  AB3X10_RS16010 (AB3X10_16000) - 3807111..3807497 (-) 387 WP_369976263.1 DUF805 domain-containing protein -
  AB3X10_RS16015 (AB3X10_16005) radA 3807582..3808967 (-) 1386 WP_369976264.1 DNA repair protein RadA Machinery gene
  AB3X10_RS16020 (AB3X10_16010) - 3809243..3811132 (-) 1890 WP_369976266.1 M61 family metallopeptidase -
  AB3X10_RS16025 (AB3X10_16015) - 3811310..3811789 (+) 480 WP_369976267.1 VOC family protein -
  AB3X10_RS16030 (AB3X10_16020) - 3811841..3812374 (-) 534 WP_369976269.1 PaaI family thioesterase -
  AB3X10_RS16035 (AB3X10_16025) - 3812442..3813026 (-) 585 WP_369976271.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48326.60 Da        Isoelectric Point: 7.7319

>NTDB_id=1026421 AB3X10_RS16015 WP_369976264.1 3807582..3808967(-) (radA) [Xanthomonas bundabergensis strain DAR 80977]
MAKAKTAYVCGECGAEYTKWQGQCAECGAWNSLSEIVLESAAAAKAPAAARRSGWAGKAETPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMAGTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALAETGI
EQILQHASAARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGSSANQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGVVKGMEVIAVERLAQALEAASA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1026421 AB3X10_RS16015 WP_369976264.1 3807582..3808967(-) (radA) [Xanthomonas bundabergensis strain DAR 80977]
ATGGCGAAGGCGAAGACGGCCTATGTCTGCGGCGAATGCGGCGCCGAGTACACCAAGTGGCAGGGCCAGTGCGCCGAGTG
CGGGGCGTGGAATTCGCTGAGCGAGATCGTGCTGGAAAGCGCGGCGGCGGCGAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGGCGGAGACGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCAT
CGGCAAGTCGACGCTGCTGCTGCAGGCGCTGGCGAAGATGGCCGGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGCCCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAGCAGATCCTGCAGCACGCCAGCGCGGCGCGGCCCAAACTGATCGTGGCCGACTCGGTGCAGACCCTGTGGACCGAGTC
GCTGACCGCCGCGCCCGGTTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAAACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTGACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATGCA
GTGCTGTATTTCGAGGGCGAGAGCGGCAGCCGTTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
GCTGGGCGTGTTCGCGATGGGCGAGAAGGGACTGAAGGAAGTGTCCAACCCGTCGGCGATCTTCCTGTCCGGCAGCAGCG
CCAACCAGCCCGGCAGCTGCGTGATGGTCACGCGCGAGGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCTTCGCCGCTGTCCAATCCGCGGCGGGTGGCGGTGGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCA
CCGGCACGGCGGCATCGTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGACCTGCCGGTGCTGCTGGCGGTGCTGTCCTCGCTGCGCGACCGGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGCCTGCGCGAGGCCGCCACGCACGGCTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCGTGGTCAAGGGCATGGAAGTGATCGCGGTGGAGCGCCTGGCGC
AGGCGCTGGAGGCGGCGAGCGCGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-434)

AAA domain (AAA_25)

(88-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.488
  radA Streptococcus mitis SK321

43.413

100

0.436
  radA Streptococcus pneumoniae D39

42.95

100

0.43
  radA Streptococcus pneumoniae TIGR4

42.95

100

0.43
  radA Streptococcus mitis NCTC 12261

42.95

100

0.43
  radA Streptococcus pneumoniae R6

42.95

100

0.43
  radA Streptococcus pneumoniae Rx1

42.95

100

0.43

Multiple sequence alignment