Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3437_RS04580 Genome accession   NZ_CP162458
Coordinates   899952..900824 (-) Length   290 a.a.
NCBI ID   WP_000593193.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM20914     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 894952..905824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3437_RS04570 (AB3437_04570) trmFO 896240..897547 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  AB3437_RS04575 (AB3437_04575) topA 897703..899778 (-) 2076 WP_001548566.1 type I DNA topoisomerase -
  AB3437_RS04580 (AB3437_04580) dprA 899952..900824 (-) 873 WP_000593193.1 DNA-processing protein DprA Machinery gene
  AB3437_RS04585 (AB3437_04585) fmhC 900997..902241 (-) 1245 WP_000672867.1 FemA/FemB family glycyltransferase FmhC -
  AB3437_RS04590 (AB3437_04590) - 902269..903387 (-) 1119 WP_001041662.1 LysM peptidoglycan-binding domain-containing protein -
  AB3437_RS04595 (AB3437_04595) sucD 903614..904522 (-) 909 WP_061821480.1 succinate--CoA ligase subunit alpha -
  AB3437_RS04600 (AB3437_04600) sucC 904544..905710 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33608.02 Da        Isoelectric Point: 9.6024

>NTDB_id=1025996 AB3437_RS04580 WP_000593193.1 899952..900824(-) (dprA) [Staphylococcus aureus strain TUM20914]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLRLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1025996 AB3437_RS04580 WP_000593193.1 899952..900824(-) (dprA) [Staphylococcus aureus strain TUM20914]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACGTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCTGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA Staphylococcus aureus N315

99.31

100

0.993

Multiple sequence alignment