Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AS97_RS04725 Genome accession   NZ_CP007153
Coordinates   1097870..1098580 (+) Length   236 a.a.
NCBI ID   WP_059144801.1    Uniprot ID   -
Organism   Streptomyces sp. AgN23     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092870..1103580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS97_RS04700 (AS97_22835) - 1093622..1094095 (+) 474 WP_059144797.1 nuclear transport factor 2 family protein -
  AS97_RS04705 (AS97_22840) - 1094140..1094694 (+) 555 WP_185929652.1 TetR/AcrR family transcriptional regulator -
  AS97_RS04710 (AS97_22845) - 1094706..1096214 (-) 1509 WP_125755408.1 cryptochrome/photolyase family protein -
  AS97_RS48450 - 1096357..1096485 (-) 129 WP_260612961.1 hypothetical protein -
  AS97_RS04720 (AS97_22855) - 1096824..1097873 (+) 1050 WP_247204768.1 histidine kinase -
  AS97_RS04725 (AS97_22860) vraR 1097870..1098580 (+) 711 WP_059144801.1 response regulator transcription factor Regulator
  AS97_RS04730 (AS97_22865) - 1098698..1099861 (+) 1164 WP_125755406.1 serine hydrolase domain-containing protein -
  AS97_RS04735 (AS97_22875) - 1099971..1102502 (-) 2532 WP_125755404.1 FtsX family ABC transporter permease -
  AS97_RS04740 (AS97_22880) - 1102652..1103419 (-) 768 WP_210567140.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25360.89 Da        Isoelectric Point: 5.0146

>NTDB_id=102591 AS97_RS04725 WP_059144801.1 1097870..1098580(+) (vraR) [Streptomyces sp. AgN23]
MTIRVVVADDQELVRSGFSMILDAQPDIEVIAEAGDGAEAVEAVRRHAPDVALLDIRMPGMDGIEACREIGADGACRTVM
LTTFDSDEYVYEALHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATTRPRRPDPRLDMLTARERE
TLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGLITAGDPLPGGASRPGSSPASARD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=102591 AS97_RS04725 WP_059144801.1 1097870..1098580(+) (vraR) [Streptomyces sp. AgN23]
TTGACGATCCGTGTGGTGGTGGCCGACGACCAGGAGCTGGTGCGCAGCGGCTTCTCCATGATCCTTGACGCCCAGCCGGA
CATCGAGGTGATCGCGGAGGCGGGCGACGGGGCCGAGGCCGTCGAGGCGGTGCGGCGGCACGCGCCCGATGTGGCGCTGC
TCGACATCCGGATGCCGGGTATGGACGGCATCGAGGCATGCCGCGAGATCGGTGCGGACGGCGCCTGCCGGACGGTGATG
CTGACGACCTTCGACTCCGACGAGTATGTGTACGAAGCGCTGCACGCGGGCGCGAGCGGCTTCCTGCTGAAGGATGTGCG
CAGGGACGACCTGGTGCACGCGGTACGGGTGGTGGCGCGGGGCGACTCGCTGCTCGCGCCGTCGGTGGCCCGGCGTCTGG
TGGAGCAGTACACCCGGGCGACCACCCGGCCACGGCGGCCCGATCCCCGCCTGGACATGCTGACCGCACGGGAGCGGGAG
ACACTGCTGCTGCTCGCGCGCGGCCTGTCGAACGCCGAGATCGCGGCTGAGCTGGTCGTCAGCGATCACACGGTCAAGAC
GCATGTCGGCAATGTGCTCGCCAAGCTGGGGCTGCGGGACCGGATCCAGGCGGTGATCTGCGCGTACGAGACGGGCCTGA
TCACGGCCGGAGACCCCCTGCCCGGGGGAGCGTCCCGGCCCGGTTCCTCCCCCGCGTCGGCGAGGGACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.326

91.102

0.386
  degU Bacillus subtilis subsp. subtilis str. 168

40.359

94.492

0.381

Multiple sequence alignment