Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DQL22_RS00915 Genome accession   NZ_LS483485
Coordinates   183233..184036 (+) Length   267 a.a.
NCBI ID   WP_172452394.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain NCTC11096     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 178233..189036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL22_RS00905 (NCTC11096_00181) - 179592..180437 (-) 846 WP_005704490.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DQL22_RS00910 (NCTC11096_00182) - 180545..183106 (-) 2562 WP_050332893.1 penicillin-binding protein 1A -
  DQL22_RS00915 (NCTC11096_00183) comA 183233..184036 (+) 804 WP_172452394.1 competence protein ComA Machinery gene
  DQL22_RS00920 (NCTC11096_00184) - 184050..184568 (+) 519 WP_032995314.1 PilN domain-containing protein -
  DQL22_RS00925 (NCTC11096_00185) - 184565..185098 (+) 534 WP_109843408.1 competence protein -
  DQL22_RS00930 (NCTC11096_00186) - 185098..185493 (+) 396 WP_032995307.1 hypothetical protein -
  DQL22_RS00935 (NCTC11096_00187) comE 185503..186927 (+) 1425 WP_032995306.1 type IV pilus secretin PilQ Machinery gene
  DQL22_RS00940 (NCTC11096_00188) aroK 187142..187669 (+) 528 WP_005704481.1 shikimate kinase AroK -
  DQL22_RS00945 (NCTC11096_00189) aroB 187691..188779 (+) 1089 WP_111300527.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31326.80 Da        Isoelectric Point: 6.4938

>NTDB_id=1025852 DQL22_RS00915 WP_172452394.1 183233..184036(+) (comA) [Aggregatibacter aphrophilus strain NCTC11096]
MFIKHTPSIQIGLWYHNQNVDLVWFDKQNQAQCLHLDDIDLLDLPSALNRHSNYLRRSASYKYITSIMPHQIWQKTLILP
HNLTPAECEQQCHFTLTNELPIPINEIWYDYAATPLKQGFRLEIFAIRQQIAKDYLHQFAPLQIDVLDNTAKAILRATEY
VLGKPFPANAVLLYQDTLGALAVQHKLQQTQTLFQTDKNLTALLAQYCQRYDEQPEQIFYYQMVRNDSVVPKHWRPVETH
LPLIALGNALWQQEIHKEDDELFRSFS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1025852 DQL22_RS00915 WP_172452394.1 183233..184036(+) (comA) [Aggregatibacter aphrophilus strain NCTC11096]
ATGTTCATAAAACATACACCTTCTATTCAAATAGGCTTGTGGTATCACAACCAAAATGTGGATCTCGTGTGGTTCGACAA
GCAAAACCAAGCACAATGTTTACATCTCGACGACATAGATCTGCTGGATTTACCCAGCGCCTTAAATCGTCACTCAAATT
ATTTACGCAGAAGTGCATCGTATAAATACATAACATCTATCATGCCACACCAAATTTGGCAGAAAACGTTAATTCTGCCG
CATAATCTCACGCCGGCGGAATGTGAACAACAATGTCATTTCACCTTAACCAACGAACTACCGATTCCCATTAATGAAAT
TTGGTATGACTACGCTGCCACGCCGTTAAAACAAGGTTTTCGGCTAGAGATTTTTGCCATTAGACAACAAATCGCGAAAG
ATTATTTACATCAATTTGCGCCTTTACAAATTGACGTGTTGGACAACACCGCCAAGGCGATATTGCGTGCAACGGAATAT
GTGCTGGGCAAGCCGTTCCCGGCAAACGCCGTGCTGTTATATCAGGACACACTAGGTGCATTGGCGGTGCAACATAAATT
GCAACAAACCCAAACCCTGTTCCAAACGGACAAAAATTTGACCGCACTTTTAGCGCAATATTGCCAACGTTATGACGAAC
AGCCGGAACAGATTTTCTATTATCAAATGGTCCGAAATGATTCTGTGGTCCCAAAACATTGGCGCCCGGTGGAAACCCAT
TTGCCGTTAATTGCGCTCGGCAATGCCTTGTGGCAACAAGAAATACATAAAGAAGATGATGAACTTTTTCGTTCGTTTTC
TTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.53

98.876

0.401
  comA Haemophilus influenzae Rd KW20

40.31

96.629

0.39

Multiple sequence alignment