Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3438_RS08510 Genome accession   NZ_CP162442
Coordinates   1702433..1703119 (+) Length   228 a.a.
NCBI ID   WP_001793467.1    Uniprot ID   A0A641AAY3
Organism   Staphylococcus aureus strain TUM22188     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1697433..1708119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3438_RS08475 (AB3438_08475) yqeH 1697960..1699060 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  AB3438_RS08480 (AB3438_08480) aroE 1699074..1699880 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  AB3438_RS08485 (AB3438_08485) yhbY 1699884..1700174 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  AB3438_RS08490 (AB3438_08490) nadD 1700177..1700746 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AB3438_RS08495 (AB3438_08495) yqeK 1700736..1701320 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AB3438_RS08500 (AB3438_08500) rsfS 1701321..1701674 (+) 354 WP_001088022.1 ribosome silencing factor -
  AB3438_RS08505 (AB3438_08505) - 1701677..1702393 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  AB3438_RS08510 (AB3438_08510) comEA 1702433..1703119 (+) 687 WP_001793467.1 ComEA family DNA-binding protein Machinery gene
  AB3438_RS08515 (AB3438_08515) - 1703211..1703672 (+) 462 WP_000439693.1 ComE operon protein 2 -
  AB3438_RS08520 (AB3438_08520) comEC 1703677..1705878 (+) 2202 WP_172576660.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3438_RS08525 (AB3438_08525) holA 1705935..1706909 (+) 975 WP_001282568.1 DNA polymerase III subunit delta -
  AB3438_RS08530 (AB3438_08530) rpsT 1706954..1707205 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25786.50 Da        Isoelectric Point: 9.6753

>NTDB_id=1025643 AB3438_RS08510 WP_001793467.1 1702433..1703119(+) (comEA) [Staphylococcus aureus strain TUM22188]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDNALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1025643 AB3438_RS08510 WP_001793467.1 1702433..1703119(+) (comEA) [Staphylococcus aureus strain TUM22188]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATAATG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCATGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A641AAY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

100

100

1
  comEA Staphylococcus aureus N315

97.368

100

0.974

Multiple sequence alignment