Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQN71_RS03140 Genome accession   NZ_LS483471
Coordinates   606918..607514 (+) Length   198 a.a.
NCBI ID   WP_005589561.1    Uniprot ID   A0ABN4B4Q0
Organism   Streptococcus cristatus strain NCTC13807     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 601918..612514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN71_RS03125 (NCTC13807_00604) - 603226..603678 (+) 453 WP_015605163.1 Fur family transcriptional regulator -
  DQN71_RS03130 (NCTC13807_00605) - 603830..604522 (+) 693 WP_015605162.1 phosphoglycerate mutase -
  DQN71_RS03135 (NCTC13807_00606) pbp2b 604807..606864 (+) 2058 WP_095666412.1 penicillin-binding protein PBP2B -
  DQN71_RS03140 (NCTC13807_00607) recR 606918..607514 (+) 597 WP_005589561.1 recombination mediator RecR Machinery gene
  DQN71_RS03145 (NCTC13807_00608) - 607663..608709 (+) 1047 WP_015604540.1 D-alanine--D-alanine ligase -
  DQN71_RS03150 (NCTC13807_00609) - 608814..610187 (+) 1374 WP_015604541.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQN71_RS03155 (NCTC13807_00610) - 610174..610785 (+) 612 WP_015604542.1 NUDIX hydrolase N-terminal domain-containing protein -
  DQN71_RS03160 (NCTC13807_00611) - 610980..611672 (+) 693 WP_111694508.1 TIGR02206 family membrane protein -
  DQN71_RS03165 (NCTC13807_00612) - 611781..612461 (+) 681 WP_015604544.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21654.84 Da        Isoelectric Point: 4.4687

>NTDB_id=1025536 DQN71_RS03140 WP_005589561.1 606918..607514(+) (recR) [Streptococcus cristatus strain NCTC13807]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCAICTDQTRDQT
VILIVEDSRDVSAMENIQEYHGLYHVLHGLISPMNGVGPDDINLKSLLTRLMDSQVMEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1025536 DQN71_RS03140 WP_005589561.1 606918..607514(+) (recR) [Streptococcus cristatus strain NCTC13807]
ATGCTTTATCCAACCCCTATCGCCAAATTGATTGATAGTTTTTCCAAGCTGCCGGGTATCGGCATCAAGACAGCTACTCG
CCTGGCCTTTTATACCATCGGAATGAGTGACGATGATGTCAATGAGTTTGCCAAAAATCTACTAGCTGCCAAGCGCGAGC
TGACCTACTGCTCTATCTGTGGCAATCTGACGGATGATGATCCCTGTGCTATCTGTACGGATCAAACGCGCGATCAGACT
GTAATTTTGATCGTTGAGGATAGCCGCGATGTGTCTGCCATGGAAAATATCCAAGAATACCACGGCCTTTATCATGTCCT
CCATGGCCTCATTTCGCCTATGAACGGTGTAGGACCAGACGACATCAACCTCAAGAGTCTCCTGACTCGCTTGATGGACA
GCCAAGTGATGGAAGTGATTGTGGCTACCAATGCAACGGCTGACGGAGAAGCGACTTCTATGTATATTTCTCGTGTGCTC
AAGCCTGCGGGTATCAAGGTGACTCGACTGGCTCGCGGACTGGCTGTCGGCGCTGATATCGAATATGCAGACGAAGTGAC
CCTGCTCCGAGCCATTGAAAATCGGACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.414

100

0.914
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495