Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3424_RS08560 Genome accession   NZ_CP162436
Coordinates   1698753..1699148 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22699     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1693753..1704148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3424_RS08535 (AB3424_08535) thiE 1694353..1694994 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  AB3424_RS08540 (AB3424_08540) thiM 1694996..1695787 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  AB3424_RS08545 (AB3424_08545) thiD 1695771..1696601 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AB3424_RS08550 (AB3424_08550) tenA 1696594..1697283 (-) 690 WP_000396077.1 thiaminase II -
  AB3424_RS08555 (AB3424_08555) sceD 1697669..1698364 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  AB3424_RS08560 (AB3424_08560) ssb 1698753..1699148 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  AB3424_RS08565 (AB3424_08565) - 1699342..1699782 (+) 441 WP_000846746.1 YwpF-like family protein -
  AB3424_RS08570 (AB3424_08570) fabZ 1699841..1700281 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB3424_RS08575 (AB3424_08575) murA 1700315..1701580 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AB3424_RS08580 (AB3424_08580) - 1701691..1701924 (-) 234 WP_000384523.1 DUF1146 family protein -
  AB3424_RS08585 (AB3424_08585) - 1702056..1702148 (-) 93 WP_001790611.1 hypothetical protein -
  AB3424_RS08590 (AB3424_08590) - 1702486..1702890 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1025483 AB3424_RS08560 WP_000932694.1 1698753..1699148(-) (ssb) [Staphylococcus aureus strain TUM22699]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1025483 AB3424_RS08560 WP_000932694.1 1698753..1699148(-) (ssb) [Staphylococcus aureus strain TUM22699]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment