Detailed information NTG1025467

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: AB3424_RS05745
• Genome accession: NZ_CP162436
• Coordinates: 1156777..1157223 (-)
• Length: 148 a.a.
• NCBI ID: WP_001790850.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TUM22699
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1154901..1156073	1156777..1157223	flank	704

Gene organization within MGE regions

Location: 1154901..1157223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3424_RS05730 (AB3424_05730)	-	1154901..1156073 (-)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
AB3424_RS05735 (AB3424_05735)	comGF	1156151..1156573 (-)	423	WP_258922346.1	competence type IV pilus minor pilin ComGF	Machinery gene
AB3424_RS05740 (AB3424_05740)	comGE	1156491..1156790 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
AB3424_RS05745 (AB3424_05745)	comGD	1156777..1157223 (-)	447	WP_001790850.1	competence type IV pilus minor pilin ComGD	Machinery gene

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17213.42 Da
• Isoelectric Point: 10.3682

>NTDB_id=1025467 AB3424_RS05745 WP_001790850.1 1156777..1157223(-) (comGD) [Staphylococcus aureus strain TUM22699]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide

• Length: 447 bp

>NTDB_id=1025467 AB3424_RS05745 WP_001790850.1 1156777..1157223(-) (comGD) [Staphylococcus aureus strain TUM22699]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Staphylococcus aureus MW2	99.324	100	0.993
comGD	Staphylococcus aureus N315	99.324	100	0.993