Detailed information NTG1025465

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: AB3424_RS05735
• Genome accession: NZ_CP162436
• Coordinates: 1156151..1156573 (-)
• Length: 140 a.a.
• NCBI ID: WP_258922346.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain TUM22699
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1154901..1156073	1156151..1156573	flank	78

Gene organization within MGE regions

Location: 1154901..1156573

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3424_RS05730 (AB3424_05730)	-	1154901..1156073 (-)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
AB3424_RS05735 (AB3424_05735)	comGF	1156151..1156573 (-)	423	WP_258922346.1	competence type IV pilus minor pilin ComGF	Machinery gene

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 16413.66 Da
• Isoelectric Point: 10.0943

>NTDB_id=1025465 AB3424_RS05735 WP_258922346.1 1156151..1156573(-) (comGF) [Staphylococcus aureus strain TUM22699]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVDKVRIIV

Nucleotide

• Length: 423 bp

>NTDB_id=1025465 AB3424_RS05735 WP_258922346.1 1156151..1156573(-) (comGF) [Staphylococcus aureus strain TUM22699]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTTGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTG
ATAAAGTCCGTATAATTGTGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (66-138)

• Prokaryotic N-terminal methylation motif (N_methyl) (28-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Staphylococcus aureus MW2	100	95	0.95
comGF	Staphylococcus aureus N315	96.241	95	0.914