Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   AB3430_RS12815 Genome accession   NZ_CP162430
Coordinates   2570223..2570720 (-) Length   165 a.a.
NCBI ID   WP_001788897.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22702     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2565223..2575720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3430_RS12790 (AB3430_12790) gcvPB 2565385..2566857 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  AB3430_RS12795 (AB3430_12795) gcvPA 2566850..2568196 (-) 1347 WP_341262150.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AB3430_RS12800 (AB3430_12800) gcvT 2568216..2569307 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  AB3430_RS12805 (AB3430_12805) - 2569466..2569990 (-) 525 WP_001015120.1 shikimate kinase -
  AB3430_RS12810 (AB3430_12810) - 2569980..2570126 (-) 147 WP_001792109.1 hypothetical protein -
  AB3430_RS12815 (AB3430_12815) comGF 2570223..2570720 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB3430_RS12820 (AB3430_12820) comGE 2570638..2570937 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  AB3430_RS12825 (AB3430_12825) comGD 2570924..2571370 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB3430_RS12830 (AB3430_12830) comGC 2571348..2571659 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AB3430_RS12835 (AB3430_12835) comGB 2571673..2572743 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB3430_RS12840 (AB3430_12840) comGA 2572715..2573689 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  AB3430_RS12845 (AB3430_12845) - 2573741..2574364 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AB3430_RS12850 (AB3430_12850) - 2574361..2574690 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AB3430_RS12855 (AB3430_12855) - 2574690..2575676 (-) 987 WP_000161311.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.99 Da        Isoelectric Point: 10.1964

>NTDB_id=1025385 AB3430_RS12815 WP_001788897.1 2570223..2570720(-) (comGF) [Staphylococcus aureus strain TUM22702]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1025385 AB3430_RS12815 WP_001788897.1 2570223..2570720(-) (comGF) [Staphylococcus aureus strain TUM22702]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

100

100

1
  comGF Staphylococcus aureus MW2

96.364

100

0.964

Multiple sequence alignment