Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AB3425_RS06920 Genome accession   NZ_CP162429
Coordinates   1379561..1380190 (+) Length   209 a.a.
NCBI ID   WP_000153530.1    Uniprot ID   D9IFM7
Organism   Staphylococcus aureus strain TUM22705     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374561..1385190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3425_RS06895 (AB3425_06895) - 1374940..1375926 (-) 987 WP_115210235.1 aromatic acid exporter family protein -
  AB3425_RS06900 (AB3425_06900) map 1376454..1377212 (+) 759 WP_000636142.1 type I methionyl aminopeptidase -
  AB3425_RS06905 (AB3425_06905) - 1377429..1377815 (+) 387 WP_001110179.1 hypothetical protein -
  AB3425_RS06910 (AB3425_06910) liaF 1377830..1378531 (+) 702 WP_000149064.1 cell wall-active antibiotics response protein LiaF -
  AB3425_RS06915 (AB3425_06915) vraS 1378528..1379571 (+) 1044 WP_001017131.1 sensor histidine kinase Regulator
  AB3425_RS06920 (AB3425_06920) vraR 1379561..1380190 (+) 630 WP_000153530.1 two-component system response regulator VraR Regulator
  AB3425_RS06925 (AB3425_06925) - 1380306..1381523 (-) 1218 WP_000037069.1 YihY/virulence factor BrkB family protein -
  AB3425_RS06930 (AB3425_06930) - 1381801..1382076 (-) 276 WP_000428172.1 YtxH domain-containing protein -
  AB3425_RS06935 (AB3425_06935) - 1382083..1382547 (-) 465 WP_000228666.1 low molecular weight protein-tyrosine-phosphatase -
  AB3425_RS06940 (AB3425_06940) - 1382694..1382894 (+) 201 WP_000180461.1 DUF1128 family protein -
  AB3425_RS06945 (AB3425_06945) - 1382897..1384153 (+) 1257 WP_108932452.1 aminopeptidase -
  AB3425_RS06950 (AB3425_06950) - 1384243..1384773 (+) 531 WP_108932453.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23545.29 Da        Isoelectric Point: 5.3889

>NTDB_id=1025323 AB3425_RS06920 WP_000153530.1 1379561..1380190(+) (vraR) [Staphylococcus aureus strain TUM22705]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVL
MLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1025323 AB3425_RS06920 WP_000153530.1 1379561..1380190(+) (vraR) [Staphylococcus aureus strain TUM22705]
ATGACGATTAAAGTATTGTTTGTGGATGATCATGAAATGGTACGTATAGGAATTTCAAGTTATCTATCAACGCAAAGTGA
TATTGAAGTAGTTGGTGAAGGCGCTTCTGGTAAAGAAGCAATTGCCAAAGCCCATGAGTTGAAGCCAGATTTAATTTTAA
TGGATTTACTTATGGATGACATGGATGGTGTAGAAGCGACGACTCAGATTAAAAAAGATTTACCGCAAATTAAAGTATTA
ATGTTAACTAGTTTTATTGAAGATAAAGAGGTATATCGTGCATTAGATGCAGGTGTCGATAGTTACATTTTAAAAACAAC
AAGTGCAAAAGATATCGCCGATGCAGTTCGTAAAACTTCTAGAGGAGAATCTGTTTTTGAACCGGAAGTTTTAGTGAAAA
TGCGTAACCGTATGAAAAAGCGCGCAGAGTTATATGAAATGCTTACAGAACGAGAAATGGAAATATTATTATTGATTGCG
AAAGGTTACTCAAATCAAGAAATTGCTAGTGCATCGCATATTACTATTAAAACGGTTAAGACACATGTGAGTAACATTTT
AAGTAAGTTAGAAGTGCAAGATAGAACACAAGCTGTTATCTATGCATTCCAACATAATTTAATTCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9IFM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

99.522

100

0.995
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373

Multiple sequence alignment