Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB3428_RS05185 Genome accession   NZ_CP162428
Coordinates   1084909..1085595 (-) Length   228 a.a.
NCBI ID   WP_001802022.1    Uniprot ID   A0A7U7EYP5
Organism   Staphylococcus aureus strain TUM22707     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079909..1090595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3428_RS05165 (AB3428_05165) rpsT 1080824..1081075 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  AB3428_RS05170 (AB3428_05170) holA 1081120..1082094 (-) 975 WP_001282563.1 DNA polymerase III subunit delta -
  AB3428_RS05175 (AB3428_05175) - 1082151..1084351 (-) 2201 Protein_1025 DNA internalization-related competence protein ComEC/Rec2 -
  AB3428_RS05180 (AB3428_05180) - 1084356..1084817 (-) 462 WP_000439693.1 ComE operon protein 2 -
  AB3428_RS05185 (AB3428_05185) comEA 1084909..1085595 (-) 687 WP_001802022.1 ComEA family DNA-binding protein Machinery gene
  AB3428_RS05190 (AB3428_05190) - 1085635..1086351 (-) 717 WP_000084830.1 class I SAM-dependent methyltransferase -
  AB3428_RS05195 (AB3428_05195) rsfS 1086354..1086707 (-) 354 WP_001088020.1 ribosome silencing factor -
  AB3428_RS05200 (AB3428_05200) yqeK 1086708..1087292 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AB3428_RS05205 (AB3428_05205) nadD 1087282..1087851 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  AB3428_RS05210 (AB3428_05210) yhbY 1087854..1088144 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  AB3428_RS05215 (AB3428_05215) aroE 1088148..1088954 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  AB3428_RS05220 (AB3428_05220) yqeH 1088968..1090068 (-) 1101 WP_001280137.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25900.65 Da        Isoelectric Point: 9.6751

>NTDB_id=1025288 AB3428_RS05185 WP_001802022.1 1084909..1085595(-) (comEA) [Staphylococcus aureus strain TUM22707]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1025288 AB3428_RS05185 WP_001802022.1 1084909..1085595(-) (comEA) [Staphylococcus aureus strain TUM22707]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACCGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7EYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

100

1
  comEA Staphylococcus aureus MW2

97.368

100

0.974

Multiple sequence alignment