Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AB3428_RS02240 Genome accession   NZ_CP162428
Coordinates   460421..460990 (-) Length   189 a.a.
NCBI ID   WP_341262091.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22707     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 455421..465990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3428_RS02220 (AB3428_02220) - 456926..458284 (+) 1359 WP_000021865.1 TrkH family potassium uptake protein -
  AB3428_RS02225 (AB3428_02225) - 458423..459934 (+) 1512 WP_000414165.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  AB3428_RS02240 (AB3428_02240) comK/comK1 460421..460990 (-) 570 WP_341262091.1 competence protein ComK Regulator
  AB3428_RS02245 (AB3428_02245) - 461200..461418 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  AB3428_RS02250 (AB3428_02250) - 461499..462485 (-) 987 WP_000668818.1 lipoate--protein ligase -
  AB3428_RS02255 (AB3428_02255) - 462684..462860 (+) 177 WP_000214898.1 YkvS family protein -
  AB3428_RS02260 (AB3428_02260) - 462875..463477 (+) 603 WP_001033865.1 CPBP family glutamic-type intramembrane protease -
  AB3428_RS02265 (AB3428_02265) - 463792..463854 (+) 63 WP_228764722.1 hypothetical protein -
  AB3428_RS02270 (AB3428_02270) - 464393..464494 (+) 102 WP_001792055.1 hypothetical protein -
  AB3428_RS02275 (AB3428_02275) - 464516..464776 (+) 261 WP_033860750.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22569.77 Da        Isoelectric Point: 9.6091

>NTDB_id=1025275 AB3428_RS02240 WP_341262091.1 460421..460990(-) (comK/comK1) [Staphylococcus aureus strain TUM22707]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRVIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1025275 AB3428_RS02240 WP_341262091.1 460421..460990(-) (comK/comK1) [Staphylococcus aureus strain TUM22707]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCTATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCGTGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment