Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   DQN45_RS01630 Genome accession   NZ_LS483438
Coordinates   324437..325672 (-) Length   411 a.a.
NCBI ID   WP_005661954.1    Uniprot ID   A0ABY1VUA2
Organism   Haemophilus influenzae strain NCTC12975     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 319437..330672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN45_RS01595 (NCTC12975_00320) - 319932..320552 (-) 621 WP_011272188.1 YigZ family protein -
  DQN45_RS01600 (NCTC12975_00321) tusA 320668..320907 (+) 240 WP_005665561.1 sulfurtransferase TusA -
  DQN45_RS01605 (NCTC12975_00322) htpX 320949..321803 (-) 855 WP_162837812.1 protease HtpX -
  DQN45_RS01610 (NCTC12975_00323) - 321968..322357 (-) 390 WP_005630808.1 RidA family protein -
  DQN45_RS01615 (NCTC12975_00324) - 322414..323166 (-) 753 WP_005648600.1 VacJ family lipoprotein -
  DQN45_RS01620 (NCTC12975_00325) nusG 323317..323874 (-) 558 WP_005648601.1 transcription termination/antitermination protein NusG -
  DQN45_RS01625 (NCTC12975_00326) secE 323876..324292 (-) 417 WP_005658616.1 preprotein translocase subunit SecE -
  DQN45_RS01630 (NCTC12975_00327) clpX 324437..325672 (-) 1236 WP_005661954.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  DQN45_RS01635 (NCTC12975_00328) clpP 325682..326293 (-) 612 WP_257003823.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  DQN45_RS01640 (NCTC12975_00329) tig 326386..327684 (-) 1299 WP_042593919.1 trigger factor -
  DQN45_RS09320 - 328053..328103 (+) 51 Protein_308 hypothetical protein -
  DQN45_RS09330 - 328126..328204 (+) 79 Protein_309 PT domain-containing protein -
  DQN45_RS09335 - 328175..328556 (+) 382 Protein_310 TonB-dependent receptor plug domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45733.32 Da        Isoelectric Point: 4.7428

>NTDB_id=1024882 DQN45_RS01630 WP_005661954.1 324437..325672(-) (clpX) [Haemophilus influenzae strain NCTC12975]
MTDKDKDLHCSFCGKEKGEVDRLIAGTDGYICNECIELCHSMLEESHDKNLEESAVENEEKLPTPHEIRAHLDDYVIGQD
YAKKVLSVAVYNHYKRLRTNYESNDVELGKSNILLIGPTGSGKTLLAQTLARRLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCEYDTEKAEKGIIYIDEIDKISRKSEGASITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMVKLDTSK
ILFICGGAFAGLDKIIDKRTQTSTSIGFNAKVEKDEKQQSLSELFRQVEPDDLMKFGLIPEFIGRLPMIAPLSELDEDAL
IQILTKPKNALIKQYQALFGLEKVELDFTPEALKAMAKKALERKTGARGLRSIVEAVLLDTMYDLPSLENLQKVIVDEST
IVDNLAPKLEY

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1024882 DQN45_RS01630 WP_005661954.1 324437..325672(-) (clpX) [Haemophilus influenzae strain NCTC12975]
ATGACAGACAAAGATAAAGATTTGCACTGCTCTTTTTGCGGAAAGGAAAAAGGCGAAGTAGATAGATTAATTGCTGGCAC
AGACGGTTATATTTGTAATGAATGTATTGAACTTTGTCACTCAATGCTTGAAGAAAGTCATGATAAAAATTTAGAGGAAA
GTGCGGTAGAAAATGAAGAAAAATTACCAACACCTCACGAAATTCGCGCTCATCTAGATGATTATGTTATTGGTCAAGAT
TATGCGAAAAAAGTGCTTTCTGTGGCAGTTTATAATCATTATAAACGCTTGCGAACTAACTATGAAAGCAATGATGTAGA
GCTTGGTAAAAGTAATATTTTACTTATAGGCCCTACAGGTAGCGGAAAAACGTTACTTGCGCAAACATTAGCTCGTCGTT
TAAATGTACCCTTTGCGATGGCGGATGCAACCACATTAACGGAAGCTGGTTATGTGGGGGAAGATGTGGAGAATGTGTTA
CAGAAACTTTTGCAAAATTGTGAATACGATACTGAAAAAGCAGAGAAAGGCATTATTTATATTGATGAAATTGATAAAAT
TAGCCGTAAATCGGAAGGCGCATCAATTACTCGAGATGTTTCAGGAGAGGGGGTGCAACAGGCTTTATTAAAACTTATTG
AAGGTACAATCGCTTCCATTCCACCTCAAGGCGGTCGTAAACATCCGCAACAAGAAATGGTAAAATTGGATACGTCTAAA
ATTCTCTTTATTTGCGGCGGTGCATTTGCAGGATTAGATAAAATTATTGATAAACGCACTCAAACCAGTACGAGTATTGG
TTTTAATGCCAAAGTTGAAAAAGATGAAAAACAACAATCTCTTTCTGAATTATTCCGTCAAGTTGAACCTGATGATTTAA
TGAAATTTGGTTTAATTCCAGAATTTATTGGACGCTTGCCAATGATTGCCCCATTAAGTGAATTAGACGAAGATGCGCTG
ATACAAATTCTCACAAAACCAAAAAACGCATTAATTAAACAATATCAAGCCTTATTTGGATTGGAAAAAGTAGAATTGGA
TTTCACACCAGAAGCATTAAAAGCAATGGCGAAAAAAGCACTTGAAAGAAAAACGGGTGCGCGTGGCTTACGTTCTATCG
TAGAAGCAGTGTTGTTAGATACAATGTATGATCTACCGTCTCTTGAGAATTTACAAAAAGTTATCGTTGATGAATCGACA
ATTGTAGATAATCTTGCGCCAAAATTAGAATATTAG

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(315-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(8-45)

AAA domain (Cdc48 subfamily) (AAA_2)

(110-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.353

99.27

0.569
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56

97.324

0.545

Multiple sequence alignment