Detailed information NTG1024804

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3L00_RS16295
• Genome accession: NZ_CP162300
• Coordinates: 3481448..3482308 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152268.1
• Uniprot ID: A0A1E3M8A8
• Organism: Acinetobacter baumannii strain SIMBA113
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3476448..3487308

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3L00_RS16275 (AB3L00_16275)	secG	3477053..3477382 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
AB3L00_RS16280 (AB3L00_16280)	tpiA	3477395..3478189 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
AB3L00_RS16285 (AB3L00_16285)	pilB	3478480..3480192 (+)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB3L00_RS16290 (AB3L00_16290)	pilC	3480222..3481448 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
AB3L00_RS16295 (AB3L00_16295)	pilD	3481448..3482308 (+)	861	WP_001152268.1	A24 family peptidase	Machinery gene
AB3L00_RS16300 (AB3L00_16300)	coaE	3482310..3482906 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
AB3L00_RS16305 (AB3L00_16305)	-	3482903..3483820 (-)	918	WP_000075016.1	DMT family transporter	-
AB3L00_RS16310 (AB3L00_16310)	rlmB	3483856..3484605 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB3L00_RS16315 (AB3L00_16315)	-	3484707..3485033 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AB3L00_RS16320 (AB3L00_16320)	-	3485110..3486420 (-)	1311	WP_368217580.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32094.47 Da
• Isoelectric Point: 7.1041

>NTDB_id=1024804 AB3L00_RS16295 WP_001152268.1 3481448..3482308(+) (pilD) [Acinetobacter baumannii strain SIMBA113]
MQDIIAYFIQNFTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1024804 AB3L00_RS16295 WP_001152268.1 3481448..3482308(+) (pilD) [Acinetobacter baumannii strain SIMBA113]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTTACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGTAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A1E3M8A8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.971	97.552	0.507
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437