Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AB3L00_RS01520 Genome accession   NZ_CP162300
Coordinates   320297..320938 (+) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain SIMBA113     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315297..325938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3L00_RS01500 (AB3L00_01500) - 315345..315677 (+) 333 WP_000169602.1 hypothetical protein -
  AB3L00_RS01505 (AB3L00_01505) - 315680..316504 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  AB3L00_RS01510 (AB3L00_01510) ponA 316522..319077 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AB3L00_RS01515 (AB3L00_01515) pilM 319239..320297 (+) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  AB3L00_RS01520 (AB3L00_01520) pilN 320297..320938 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  AB3L00_RS01525 (AB3L00_01525) pilO 320935..321675 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB3L00_RS01530 (AB3L00_01530) pilP 321686..322213 (+) 528 WP_368219325.1 pilus assembly protein PilP Machinery gene
  AB3L00_RS01535 (AB3L00_01535) pilQ 322281..324446 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  AB3L00_RS01540 (AB3L00_01540) aroK 324458..325027 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=1024769 AB3L00_RS01520 WP_000201223.1 320297..320938(+) (pilN) [Acinetobacter baumannii strain SIMBA113]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1024769 AB3L00_RS01520 WP_000201223.1 320297..320938(+) (pilN) [Acinetobacter baumannii strain SIMBA113]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704

Multiple sequence alignment