Detailed information NTG1024741

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABZP34_RS21920
• Genome accession: NZ_CP162269
• Coordinates: 4511655..4512455 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain KV_29
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4506655..4517455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZP34_RS21885 (ABZP34_21885)	gspH	4506808..4507323 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
ABZP34_RS21890 (ABZP34_21890)	gspI	4507320..4507685 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
ABZP34_RS21895 (ABZP34_21895)	gspJ	4507682..4508278 (+)	597	WP_023297079.1	type II secretion system minor pseudopilin GspJ	-
ABZP34_RS21900 (ABZP34_21900)	gspK	4508275..4509255 (+)	981	WP_188200621.1	type II secretion system minor pseudopilin GspK	-
ABZP34_RS21905 (ABZP34_21905)	gspL	4509248..4510444 (+)	1197	WP_188200620.1	type II secretion system protein GspL	-
ABZP34_RS21910 (ABZP34_21910)	-	4510437..4510922 (+)	486	WP_012968921.1	type II secretion system protein M	-
ABZP34_RS21915 (ABZP34_21915)	-	4510912..4511658 (+)	747	WP_023322077.1	type II secretion system protein N	-
ABZP34_RS21920 (ABZP34_21920)	pilD	4511655..4512455 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
ABZP34_RS21925 (ABZP34_21925)	hrpB	4512502..4514937 (-)	2436	WP_368283011.1	ATP-dependent helicase HrpB	-
ABZP34_RS21930 (ABZP34_21930)	thpR	4515010..4515546 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
ABZP34_RS21935 (ABZP34_21935)	sfsA	4515546..4516262 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
ABZP34_RS21940 (ABZP34_21940)	dksA	4516425..4516880 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=1024741 ABZP34_RS21920 WP_023322076.1 4511655..4512455(+) (pilD) [Klebsiella variicola subsp. variicola strain KV_29]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1024741 ABZP34_RS21920 WP_023322076.1 4511655..4512455(+) (pilD) [Klebsiella variicola subsp. variicola strain KV_29]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425