Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   AB1F57_RS11255 Genome accession   NZ_CP162268
Coordinates   2222292..2222984 (-) Length   230 a.a.
NCBI ID   WP_105111625.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2217292..2227984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS11230 (AB1F57_11230) - 2217490..2218202 (-) 713 Protein_2179 nitroreductase family protein -
  AB1F57_RS11235 (AB1F57_11235) dnaI 2218199..2219098 (-) 900 WP_367985754.1 primosomal protein DnaI -
  AB1F57_RS11240 (AB1F57_11240) - 2219098..2220258 (-) 1161 WP_367985755.1 replication initiation/membrane attachment protein -
  AB1F57_RS11245 (AB1F57_11245) nrdR 2220245..2220736 (-) 492 WP_167785924.1 transcriptional regulator NrdR -
  AB1F57_RS11250 (AB1F57_11250) - 2220818..2221936 (-) 1119 WP_367985756.1 AI-2E family transporter -
  AB1F57_RS11255 (AB1F57_11255) covR 2222292..2222984 (-) 693 WP_105111625.1 DNA-binding response regulator Regulator
  AB1F57_RS11260 (AB1F57_11260) gndA 2223062..2224486 (-) 1425 WP_367985757.1 NADP-dependent phosphogluconate dehydrogenase -
  AB1F57_RS11265 (AB1F57_11265) - 2224601..2225134 (-) 534 WP_105137606.1 YceD family protein -
  AB1F57_RS11270 (AB1F57_11270) trxB 2225143..2226060 (-) 918 WP_105137607.1 thioredoxin-disulfide reductase -
  AB1F57_RS11275 (AB1F57_11275) - 2226073..2226297 (-) 225 WP_105122970.1 DUF4059 family protein -
  AB1F57_RS11280 (AB1F57_11280) - 2226318..2227661 (-) 1344 WP_170239449.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26104.82 Da        Isoelectric Point: 5.0092

>NTDB_id=1024708 AB1F57_RS11255 WP_105111625.1 2222292..2222984(-) (covR) [Streptococcus sp. ZY1909104]
MAKKILIAGRERNLSHFVSMELQKKDYLVDYASTGQEALSLAHETDFDLILMSFQLSDMSSKELSTQLLAIKPASVLIVA
IDSADVDEHGEEVLSYAVSYVVKPFVISELVEQISAIFRGRDFIDNHCTQVPLQAAYRDLKIDFQNRTVSRGDELINLTR
REYDLLATLMNSPEPVTREQLLERVWKYEATSSETNVVDVYIRYLRGKLDVAGKPSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 693 bp        

>NTDB_id=1024708 AB1F57_RS11255 WP_105111625.1 2222292..2222984(-) (covR) [Streptococcus sp. ZY1909104]
ATGGCTAAGAAAATTTTGATTGCAGGTCGTGAGCGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAGAAGAAGGACTA
TTTGGTGGACTATGCTTCTACTGGCCAGGAGGCTTTGTCCTTGGCGCATGAGACGGATTTTGATTTGATTCTCATGAGTT
TTCAGCTGTCAGATATGTCCAGTAAGGAATTGTCCACGCAGTTATTAGCTATCAAACCTGCATCCGTCCTGATTGTGGCT
ATTGATTCGGCAGATGTGGATGAGCATGGCGAGGAAGTCTTGTCCTATGCGGTTTCCTATGTGGTCAAGCCCTTTGTCAT
CAGCGAATTGGTCGAGCAGATTTCAGCTATTTTCCGTGGTCGGGATTTTATTGACAATCATTGTACTCAGGTTCCCTTGC
AGGCTGCTTATCGAGATTTGAAAATCGATTTTCAAAATCGCACGGTATCCCGTGGAGATGAGCTGATTAACCTGACTCGT
CGAGAGTACGATCTCCTGGCGACCCTGATGAATAGTCCTGAGCCTGTCACTCGCGAACAATTGTTAGAGCGGGTTTGGAA
ATACGAGGCGACATCATCGGAAACCAATGTGGTGGATGTCTATATCCGCTATCTGCGTGGGAAATTGGATGTAGCTGGAA
AACCGTCCTATATCAAGACAGTTCGCGGTGTTGGATATGCCATGCGTGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.523

100

0.5
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.156

100

0.443

Multiple sequence alignment