Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   AB1F57_RS07495 Genome accession   NZ_CP162268
Coordinates   1482050..1483279 (+) Length   409 a.a.
NCBI ID   WP_167785534.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477050..1488279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS07470 (AB1F57_07470) - 1478199..1479269 (+) 1071 WP_367985559.1 glycosyltransferase -
  AB1F57_RS07475 (AB1F57_07475) - 1479395..1479673 (+) 279 WP_174853304.1 hypothetical protein -
  AB1F57_RS07480 (AB1F57_07480) - 1479686..1479988 (+) 303 WP_167785531.1 hypothetical protein -
  AB1F57_RS07485 (AB1F57_07485) - 1480041..1480880 (+) 840 WP_367985560.1 thymidylate synthase -
  AB1F57_RS07490 (AB1F57_07490) - 1481341..1481853 (+) 513 WP_367985561.1 dihydrofolate reductase -
  AB1F57_RS07495 (AB1F57_07495) clpX 1482050..1483279 (+) 1230 WP_167785534.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB1F57_RS07500 (AB1F57_07500) yihA 1483334..1483921 (+) 588 WP_167785535.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  AB1F57_RS07505 (AB1F57_07505) rplJ 1484147..1484641 (+) 495 WP_167785536.1 50S ribosomal protein L10 -
  AB1F57_RS07510 (AB1F57_07510) rplL 1484713..1485078 (+) 366 WP_167785537.1 50S ribosomal protein L7/L12 -
  AB1F57_RS07515 (AB1F57_07515) - 1485657..1486316 (-) 660 WP_174853012.1 Crp/Fnr family transcriptional regulator -
  AB1F57_RS07520 (AB1F57_07520) - 1486386..1486679 (-) 294 WP_105138697.1 iron-sulfur cluster repair di-iron protein, ric -
  AB1F57_RS07525 (AB1F57_07525) - 1486699..1486932 (-) 234 WP_167785539.1 cation transporter -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45536.96 Da        Isoelectric Point: 4.5243

>NTDB_id=1024699 AB1F57_RS07495 WP_167785534.1 1482050..1483279(+) (clpX) [Streptococcus sp. ZY1909104]
MAVKHTHELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPLELLNILNHYVIGQDRA
KRALAVAVYNHYKRINFQDTRDDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENI
LLKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIHVDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIEEKDSYMQHIIADDIQKFGIIPELIGRLPVFAALDQLTEDDLVRI
LTEPRNALVKQYQTLLSYDDVELEFEEDALQEIAKKAIERKTGARGLRSIIEETMLDVMFEVPSQDDVKKVRVTKAAVDG
EGKPELETA

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1024699 AB1F57_RS07495 WP_167785534.1 1482050..1483279(+) (clpX) [Streptococcus sp. ZY1909104]
ATGGCTGTTAAGCATACACACGAGTTAATTTATTGCTCATTTTGTGGAAAAAACCAAGAAGAAGTAAAAAAAATCATCGC
AGGAAATAATGTCTTTATCTGTAATGAATGTGTGGAATTGGCCCAGGAAATTATCCGTGAGGAGTTGGCTGAGGAAGTAT
TGACAGACTTGGCTGATACGCCAAAACCACTGGAATTGCTCAATATTCTCAACCATTATGTTATCGGTCAGGACCGTGCT
AAACGTGCCTTGGCAGTAGCAGTTTACAACCACTACAAGCGCATCAATTTCCAGGATACGCGGGACGATGAGAATGATGT
GGACTTGCAAAAATCCAATATTCTGATGATTGGTCCGACTGGTTCTGGTAAGACTTTCTTGGCCCAAACCTTGGCTAAAA
GTCTCAATGTACCATTTGCCATTGCGGATGCGACAGCTCTGACTGAGGCAGGTTATGTCGGTGAGGACGTGGAAAATATC
CTCCTCAAACTCTTGCAGGCGGCGGATTTCAATATTGACCGTGCAGAAAGAGGGATTATCTATGTGGATGAAATTGATAA
AATTGCCAAAAAAGGTGAAAATGTGTCCATCACCCGCGATGTATCCGGCGAAGGGGTCCAGCAAGCTCTCTTGAAAATTA
TCGAGGGAACGGTTGCCAGCGTGCCACCTCAGGGCGGACGCAAACATCCAAACCAAGAGATGATTCACGTCGATACCAAG
AACATTCTCTTTATCGTTGGCGGTGCCTTTGATGGCATTGAAGAAATTGTTAAACAGCGTCTGGGCGAGAAAATCATTGG
TTTCGGTCAAAACAACCGTGCTATTGAAGAAAAAGATTCTTACATGCAGCACATTATCGCGGATGATATTCAGAAATTCG
GTATCATTCCAGAATTGATTGGTCGCTTGCCTGTCTTTGCAGCTCTGGACCAATTGACTGAGGATGACCTGGTGCGTATC
CTGACAGAGCCTCGAAATGCTCTTGTTAAGCAGTACCAGACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGAAGA
AGATGCTTTGCAGGAAATTGCCAAAAAAGCCATTGAGCGTAAAACTGGTGCACGTGGACTTCGTTCTATCATCGAAGAGA
CCATGTTGGATGTGATGTTTGAAGTGCCGAGTCAAGACGATGTCAAGAAGGTTCGCGTGACAAAAGCAGCAGTAGACGGT
GAAGGAAAACCTGAGCTAGAAACTGCCTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(110-305)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-392)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.415

100

0.836
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

98.778

0.579

Multiple sequence alignment