Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   AB1F57_RS04800 Genome accession   NZ_CP162268
Coordinates   948301..949338 (+) Length   345 a.a.
NCBI ID   WP_167786379.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 943301..954338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS04775 (AB1F57_04775) - 944210..944434 (-) 225 Protein_908 transposase -
  AB1F57_RS04780 (AB1F57_04780) - 944950..946152 (-) 1203 WP_367985527.1 IS110 family transposase -
  AB1F57_RS04785 (AB1F57_04785) - 946572..946928 (+) 357 WP_167786381.1 MFS transporter -
  AB1F57_RS04790 (AB1F57_04790) rsmD 947297..947836 (+) 540 WP_105136872.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB1F57_RS04795 (AB1F57_04795) coaD 947826..948314 (+) 489 WP_167786380.1 pantetheine-phosphate adenylyltransferase -
  AB1F57_RS04800 (AB1F57_04800) sepM 948301..949338 (+) 1038 WP_167786379.1 SepM family pheromone-processing serine protease Regulator
  AB1F57_RS04805 (AB1F57_04805) - 949482..950153 (+) 672 WP_167786378.1 YutD family protein -
  AB1F57_RS04810 (AB1F57_04810) rlmN 950162..951274 (+) 1113 WP_105123534.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AB1F57_RS04815 (AB1F57_04815) - 951271..951789 (+) 519 WP_167786377.1 VanZ family protein -
  AB1F57_RS04820 (AB1F57_04820) nadE 952017..952841 (-) 825 WP_367986173.1 ammonia-dependent NAD(+) synthetase -
  AB1F57_RS04825 (AB1F57_04825) - 952853..954313 (-) 1461 WP_367986174.1 nicotinate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37421.54 Da        Isoelectric Point: 4.2454

>NTDB_id=1024692 AB1F57_RS04800 WP_167786379.1 948301..949338(+) (sepM) [Streptococcus sp. ZY1909104]
MKKNKGLILILSIILGVLLLWFTVFVPLPYYIESPGGAMDVQQVLTVNEEEDKKDGSYEFTYVSVQQATALQLLFAQFDP
YADITSAEEMTGGADSEEYFRIAQFYMETSQNMAKYQGLTLAKKDVEMDFFGVYVLDLAEDSTFKDVLKIADTVVSINGK
TFESSPDLIKYVSGLELGSPVTVGYVTNGQEKSADGKIIKLVNGKNGIGITLVDHTEVKSSVPIDFQTGNIGGPSAGLMF
TLAIYTQLAEPDLRDGRTIAGTGTIEQDGKVGDIGGADKKVLSAAKAGASIFFVPNNPVDKEILKEDPDAKTNYEEAKEA
VEKAGVDIEVVPVKTVQDAIDYLKK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1024692 AB1F57_RS04800 WP_167786379.1 948301..949338(+) (sepM) [Streptococcus sp. ZY1909104]
ATGAAAAAAAATAAAGGTCTCATTTTAATTTTATCTATCATTTTAGGAGTACTCTTGCTCTGGTTTACGGTCTTTGTTCC
CCTGCCCTATTATATCGAGAGTCCTGGCGGAGCCATGGATGTGCAACAGGTCCTGACGGTTAATGAGGAAGAGGACAAGA
AGGACGGTTCTTATGAGTTTACCTATGTCTCTGTCCAGCAGGCAACGGCTCTGCAGCTGCTATTTGCCCAGTTTGATCCC
TATGCGGATATTACTTCGGCTGAGGAGATGACGGGAGGAGCAGACAGCGAGGAATATTTCCGGATTGCGCAATTTTACAT
GGAAACTTCGCAGAATATGGCCAAATACCAGGGATTAACCCTGGCCAAAAAAGATGTTGAAATGGATTTCTTTGGGGTCT
ATGTGCTTGATTTGGCGGAGGATTCGACCTTTAAGGACGTTCTCAAGATTGCGGATACGGTTGTCAGTATCAATGGCAAG
ACCTTTGAGTCGTCGCCTGATTTGATTAAGTATGTCAGCGGTTTGGAACTGGGCAGTCCTGTGACGGTGGGCTATGTGAC
AAACGGTCAGGAAAAATCAGCTGACGGTAAGATTATCAAGCTGGTCAATGGAAAAAATGGTATCGGGATTACCCTGGTGG
ACCACACAGAGGTCAAGTCCTCAGTACCTATTGACTTCCAGACGGGCAATATCGGCGGTCCTAGTGCAGGTCTCATGTTC
ACTTTGGCTATCTATACCCAGCTGGCTGAGCCAGATTTAAGAGATGGCCGGACCATTGCAGGAACGGGAACCATTGAGCA
GGACGGCAAGGTCGGCGACATTGGCGGGGCGGACAAGAAGGTCCTATCTGCTGCCAAGGCCGGTGCCAGCATCTTTTTTG
TTCCTAATAATCCTGTGGATAAGGAAATCCTAAAAGAAGATCCAGATGCCAAGACCAATTATGAGGAGGCCAAGGAGGCT
GTAGAGAAAGCGGGAGTAGACATCGAGGTCGTACCTGTCAAAACAGTCCAAGATGCCATTGATTATTTGAAGAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

58.551

100

0.586


Multiple sequence alignment