Detailed information NTG1024664

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3N38_RS20760
• Genome accession: NZ_CP162204
• Coordinates: 4259945..4260745 (+)
• Length: 266 a.a.
• NCBI ID: WP_117272030.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain STK39-1-E
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4254945..4265745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3N38_RS20725 (AB3N38_20725)	gspH	4255101..4255610 (+)	510	WP_038806668.1	type II secretion system minor pseudopilin GspH	-
AB3N38_RS20730 (AB3N38_20730)	gspI	4255613..4255978 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB3N38_RS20735 (AB3N38_20735)	gspJ	4255975..4256571 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
AB3N38_RS20740 (AB3N38_20740)	gspK	4256568..4257554 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AB3N38_RS20745 (AB3N38_20745)	gspL	4257541..4258734 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
AB3N38_RS20750 (AB3N38_20750)	-	4258727..4259212 (+)	486	WP_004145896.1	type II secretion system protein M	-
AB3N38_RS20755 (AB3N38_20755)	-	4259202..4259948 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB3N38_RS20760 (AB3N38_20760)	pilD	4259945..4260745 (+)	801	WP_117272030.1	A24 family peptidase	Machinery gene
AB3N38_RS20765 (AB3N38_20765)	hrpB	4260793..4263222 (-)	2430	WP_031588872.1	ATP-dependent helicase HrpB	-
AB3N38_RS20770 (AB3N38_20770)	thpR	4263295..4263831 (+)	537	WP_040152504.1	RNA 2',3'-cyclic phosphodiesterase	-
AB3N38_RS20775 (AB3N38_20775)	sfsA	4263831..4264547 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB3N38_RS20780 (AB3N38_20780)	dksA	4264710..4265165 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29418.05 Da
• Isoelectric Point: 9.1728

>NTDB_id=1024664 AB3N38_RS20760 WP_117272030.1 4259945..4260745(+) (pilD) [Klebsiella pneumoniae strain STK39-1-E]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPNAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1024664 AB3N38_RS20760 WP_117272030.1 4259945..4260745(+) (pilD) [Klebsiella pneumoniae strain STK39-1-E]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGAATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.679	99.624	0.485
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421