Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DQN79_RS09725 Genome accession   NZ_LS483435
Coordinates   1904144..1904623 (-) Length   159 a.a.
NCBI ID   WP_003771718.1    Uniprot ID   D4DQD8
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899144..1909623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS09695 (NCTC11050_01859) - 1899264..1899374 (-) 111 WP_040665779.1 methionine/alanine import family NSS transporter small subunit -
  DQN79_RS09700 (NCTC11050_01860) - 1899371..1900906 (-) 1536 WP_081456073.1 sodium-dependent transporter -
  DQN79_RS09705 (NCTC11050_01861) - 1901113..1901934 (-) 822 WP_003771712.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  DQN79_RS09710 (NCTC11050_01862) recX 1902085..1902534 (-) 450 WP_003771713.1 recombination regulator RecX Regulator
  DQN79_RS09715 (NCTC11050_01863) - 1902619..1903335 (-) 717 WP_040665780.1 phosphoglycolate phosphatase -
  DQN79_RS09720 (NCTC11050_01864) - 1903420..1904124 (-) 705 WP_003771717.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  DQN79_RS09725 (NCTC11050_01865) luxS 1904144..1904623 (-) 480 WP_003771718.1 S-ribosylhomocysteine lyase Regulator
  DQN79_RS09730 (NCTC11050_01866) cas2 1905654..1905947 (-) 294 WP_003771723.1 CRISPR-associated endonuclease Cas2 -
  DQN79_RS09735 (NCTC11050_01867) cas1c 1906022..1907035 (-) 1014 WP_041961436.1 type I-C CRISPR-associated endonuclease Cas1c -
  DQN79_RS09740 (NCTC11050_01868) - 1907097..1908242 (-) 1146 WP_041961437.1 Shedu anti-phage system protein SduA domain-containing protein -
  DQN79_RS12550 - 1908255..1908344 (-) 90 Protein_1883 CRISPR-associated protein Cas4 -
  DQN79_RS09745 (NCTC11050_01869) - 1908387..1909217 (-) 831 WP_041961438.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17913.44 Da        Isoelectric Point: 4.8249

>NTDB_id=1024657 DQN79_RS09725 WP_003771718.1 1904144..1904623(-) (luxS) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MSEIQIEKKMNVESFNLDHTKVKAPYVRLACVTDGDFGDKIYKYDLRVCQPNQEHMEMPSLHSLEHLMAELSRNHSDKIV
DISPMGCQTGFYIALLNMGDYDEVLQLIENTLKDVLSATEVPACNVVQCGWAASHSLEGAQQIARGLLDKRGEWPQVFA

Nucleotide


Download         Length: 480 bp        

>NTDB_id=1024657 DQN79_RS09725 WP_003771718.1 1904144..1904623(-) (luxS) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAGGCCCCTTATGT
GCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAG
AGCATATGGAAATGCCGTCCCTGCATTCGCTGGAACATTTGATGGCCGAATTGTCGCGCAACCACTCCGATAAAATCGTG
GACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAAGTGTTGCAACT
GATTGAAAATACATTGAAAGATGTTTTGTCGGCAACGGAAGTTCCGGCTTGCAACGTCGTTCAGTGCGGCTGGGCGGCCA
GCCACAGTTTGGAAGGGGCGCAGCAAATCGCGCGCGGTCTGCTCGATAAGCGCGGCGAGTGGCCGCAAGTGTTTGCCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(11-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DQD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.667

90.566

0.377