Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DQN79_RS09710 Genome accession   NZ_LS483435
Coordinates   1902085..1902534 (-) Length   149 a.a.
NCBI ID   WP_003771713.1    Uniprot ID   D4DQD5
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897085..1907534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS09680 (NCTC11050_01857) - 1897576..1897896 (-) 321 WP_003771702.1 DUF485 domain-containing protein -
  DQN79_RS09685 (NCTC11050_01858) hslO 1898139..1899035 (-) 897 WP_003771705.1 Hsp33 family molecular chaperone HslO -
  DQN79_RS09695 (NCTC11050_01859) - 1899264..1899374 (-) 111 WP_040665779.1 methionine/alanine import family NSS transporter small subunit -
  DQN79_RS09700 (NCTC11050_01860) - 1899371..1900906 (-) 1536 WP_081456073.1 sodium-dependent transporter -
  DQN79_RS09705 (NCTC11050_01861) - 1901113..1901934 (-) 822 WP_003771712.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  DQN79_RS09710 (NCTC11050_01862) recX 1902085..1902534 (-) 450 WP_003771713.1 recombination regulator RecX Regulator
  DQN79_RS09715 (NCTC11050_01863) - 1902619..1903335 (-) 717 WP_040665780.1 phosphoglycolate phosphatase -
  DQN79_RS09720 (NCTC11050_01864) - 1903420..1904124 (-) 705 WP_003771717.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  DQN79_RS09725 (NCTC11050_01865) luxS 1904144..1904623 (-) 480 WP_003771718.1 S-ribosylhomocysteine lyase Regulator
  DQN79_RS09730 (NCTC11050_01866) cas2 1905654..1905947 (-) 294 WP_003771723.1 CRISPR-associated endonuclease Cas2 -
  DQN79_RS09735 (NCTC11050_01867) cas1c 1906022..1907035 (-) 1014 WP_041961436.1 type I-C CRISPR-associated endonuclease Cas1c -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17469.76 Da        Isoelectric Point: 9.8922

>NTDB_id=1024656 DQN79_RS09710 WP_003771713.1 1902085..1902534(-) (recX) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MNPQKTLRARALDILSRQEISRAELKRKLAPHAESEEEIERVLNEFADRRWQSDERYAEAYIHSKSRKHGSLRLKQALAQ
KGVDEETVRAFLPDRDKELASAVEVVRKKFKRPPADYAEKLKQMRFLAYRGFDGDTVQTALRQAWTEEE

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1024656 DQN79_RS09710 WP_003771713.1 1902085..1902534(-) (recX) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAACCCGCAGAAAACCCTCCGCGCACGCGCACTCGACATCCTTTCACGGCAGGAAATCAGCCGTGCCGAACTCAAGCG
CAAACTTGCCCCGCATGCCGAGAGCGAAGAGGAAATCGAGCGCGTACTGAACGAATTCGCCGACCGCCGCTGGCAGTCCG
ACGAACGCTATGCCGAAGCCTATATCCACAGCAAAAGCCGCAAACACGGCTCATTGCGGCTGAAACAGGCTTTGGCGCAA
AAGGGCGTGGACGAAGAAACCGTGCGCGCCTTCCTGCCCGACCGCGACAAGGAATTGGCTTCCGCCGTAGAAGTGGTGCG
CAAAAAATTCAAACGCCCGCCCGCCGACTATGCCGAAAAACTCAAACAGATGCGCTTTTTGGCCTATCGCGGCTTCGACG
GCGACACCGTTCAGACGGCCTTAAGGCAGGCCTGGACGGAAGAAGAATAG

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(30-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DQD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

74.324

99.329

0.738