Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DQN79_RS06810 Genome accession   NZ_LS483435
Coordinates   1342827..1343501 (-) Length   224 a.a.
NCBI ID   WP_003774565.1    Uniprot ID   D4DU19
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337827..1348501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS06780 (NCTC11050_01285) - 1338517..1338969 (+) 453 WP_003774551.1 hypothetical protein -
  DQN79_RS06785 (NCTC11050_01286) - 1339173..1340312 (+) 1140 WP_003774555.1 aminotransferase class V-fold PLP-dependent enzyme -
  DQN79_RS06790 (NCTC11050_01287) - 1340518..1340823 (-) 306 WP_040666408.1 hypothetical protein -
  DQN79_RS06795 (NCTC11050_01288) - 1340885..1341394 (-) 510 WP_003774560.1 hypothetical protein -
  DQN79_RS06800 (NCTC11050_01289) - 1341677..1341970 (-) 294 WP_003774562.1 hypothetical protein -
  DQN79_RS06805 (NCTC11050_01290) - 1342073..1342600 (-) 528 WP_003774563.1 membrane integrity-associated transporter subunit PqiC -
  DQN79_RS06810 (NCTC11050_01291) radC 1342827..1343501 (-) 675 WP_003774565.1 RadC family protein Machinery gene
  DQN79_RS06815 (NCTC11050_01292) aroA 1343548..1344837 (-) 1290 WP_003774568.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  DQN79_RS06820 (NCTC11050_01293) cmk 1344970..1345629 (+) 660 WP_111751042.1 (d)CMP kinase -
  DQN79_RS06825 (NCTC11050_01294) rpsA 1345784..1347463 (+) 1680 WP_040666412.1 30S ribosomal protein S1 -
  DQN79_RS06830 (NCTC11050_01295) - 1347479..1347793 (+) 315 WP_003774573.1 integration host factor subunit beta -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24733.52 Da        Isoelectric Point: 6.8496

>NTDB_id=1024644 DQN79_RS06810 WP_003774565.1 1342827..1343501(-) (radC) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MSIKHWPEGERPREKLSALGAAALSDAELLAILLRTGIKGMSAVDLARYLLNEFGSLGRLMNAPERELVRHKGMGQASFT
QFAVVREIGRRVLAEELQEGALFDSPKAAANFLRLYLGHERVEVSLVLLLNRQNRLINCVELSRGTVAENTVYVREVVKL
ALDHYADSLIVAHNHPGGAAEPSPSDIEWTGRLKQALELVDVRLLDHFIVTARQAVSLAEQGLL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1024644 DQN79_RS06810 WP_003774565.1 1342827..1343501(-) (radC) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGAGCATCAAACACTGGCCGGAAGGCGAACGGCCGCGCGAAAAACTGTCGGCCTTGGGCGCGGCGGCCTTGAGCGATGC
CGAATTGCTGGCGATCCTGCTGCGTACCGGCATCAAAGGCATGAGCGCGGTCGATTTGGCGCGTTACCTTTTAAACGAAT
TCGGCAGCCTGGGACGGCTGATGAACGCGCCGGAGCGCGAACTGGTGCGACACAAAGGCATGGGACAGGCCAGTTTCACC
CAATTTGCCGTGGTGCGCGAAATCGGACGGCGGGTGCTGGCCGAAGAGTTGCAGGAAGGCGCACTGTTCGACAGCCCCAA
GGCGGCCGCCAACTTCCTACGCCTGTACCTTGGGCACGAACGGGTGGAAGTTTCGCTGGTATTGCTGCTCAACCGCCAAA
ACCGCCTGATAAACTGCGTGGAACTGTCGCGCGGCACAGTGGCGGAAAACACAGTGTATGTGCGCGAAGTGGTGAAACTG
GCACTCGACCATTACGCCGATTCGCTGATTGTGGCGCACAACCACCCCGGCGGCGCGGCCGAACCTTCGCCTTCCGACAT
CGAATGGACAGGCCGTCTGAAACAAGCCTTGGAACTGGTAGACGTGCGGCTGCTCGACCATTTCATCGTTACGGCGAGGC
AGGCGGTATCTCTGGCGGAACAAGGCCTGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(103-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DU19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.662

95.089

0.415
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.054

100

0.371

Multiple sequence alignment