Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DQN79_RS00315 Genome accession   NZ_LS483435
Coordinates   66198..66857 (-) Length   219 a.a.
NCBI ID   WP_003774168.1    Uniprot ID   D4DTJ5
Organism   Neisseria elongata subsp. glycolytica strain NCTC11050     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 61198..71857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN79_RS00300 (NCTC11050_00061) pilQ 62878..65013 (-) 2136 WP_003774174.1 type IV pilus secretin PilQ Machinery gene
  DQN79_RS00305 (NCTC11050_00062) pilP 65045..65551 (-) 507 WP_082019647.1 pilus assembly protein PilP Machinery gene
  DQN79_RS00310 (NCTC11050_00063) - 65570..66211 (-) 642 WP_003774170.1 type 4a pilus biogenesis protein PilO -
  DQN79_RS00315 (NCTC11050_00064) pilN 66198..66857 (-) 660 WP_003774168.1 PilN domain-containing protein Machinery gene
  DQN79_RS00320 (NCTC11050_00065) pilM 66860..67951 (-) 1092 WP_041961633.1 type IV pilus assembly protein PilM -
  DQN79_RS00325 (NCTC11050_00066) - 68101..70509 (+) 2409 WP_003774164.1 penicillin-binding protein 1A -
  DQN79_RS00330 (NCTC11050_00067) rpoH 70738..71601 (+) 864 WP_003774163.1 RNA polymerase sigma factor RpoH -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23553.05 Da        Isoelectric Point: 6.0272

>NTDB_id=1024606 DQN79_RS00315 WP_003774168.1 66198..66857(-) (pilN) [Neisseria elongata subsp. glycolytica strain NCTC11050]
MMDLIKINLLPYREELNQKKKQKFNAVMVASGLIGVGLSVVAFMGINQAISTQESRNAFLEGEIKTLDTAIAEIASLKAE
KEDFLAKKQKVEELQGKRFEGAHIIDTLNQLIPEGAFLLSVSSANEKSYEIKGKASSDNRIAMFMKSLPSTMVFGQPELL
GIKKTDNGQEFVVKADLISLNNKVLSAGSGVEADAVSKEFASGASVVAPAEQNASNGGR

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1024606 DQN79_RS00315 WP_003774168.1 66198..66857(-) (pilN) [Neisseria elongata subsp. glycolytica strain NCTC11050]
ATGATGGACTTGATCAAAATTAATCTCTTGCCGTATCGGGAAGAGTTAAACCAAAAGAAAAAGCAAAAATTTAATGCTGT
GATGGTTGCTTCAGGGCTTATTGGGGTTGGTTTATCAGTAGTAGCTTTTATGGGCATCAATCAAGCCATTTCTACTCAAG
AAAGTAGAAATGCCTTTTTAGAAGGTGAAATTAAAACGCTAGATACAGCAATAGCGGAAATAGCTAGTTTGAAAGCAGAA
AAGGAAGATTTTCTTGCGAAAAAACAGAAGGTGGAAGAGCTACAAGGTAAACGTTTCGAAGGTGCTCATATAATAGACAC
GTTAAATCAGCTTATACCAGAAGGGGCTTTTCTACTTTCAGTATCTTCAGCTAATGAGAAAAGTTATGAAATAAAAGGTA
AGGCCTCTAGTGATAACCGAATTGCAATGTTTATGAAATCCTTGCCTTCTACTATGGTATTTGGACAGCCTGAGCTTTTA
GGAATCAAAAAGACAGATAATGGTCAGGAATTTGTTGTTAAGGCAGACTTAATCTCCCTAAATAATAAAGTGCTTAGTGC
TGGGTCTGGAGTAGAAGCTGATGCTGTATCAAAAGAGTTTGCATCTGGTGCATCAGTAGTGGCACCTGCTGAACAAAATG
CATCGAATGGGGGAAGATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DTJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

46.893

80.822

0.379