Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQN31_RS02240 Genome accession   NZ_LS483421
Coordinates   422724..423758 (+) Length   344 a.a.
NCBI ID   WP_002994331.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10877     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 417724..428758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN31_RS02210 (NCTC10877_00433) tsaE 418789..419250 (+) 462 WP_002983367.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DQN31_RS02215 (NCTC10877_00434) - 419225..419749 (+) 525 WP_014407786.1 GNAT family N-acetyltransferase -
  DQN31_RS02220 (NCTC10877_00435) brpA 419758..421041 (+) 1284 WP_014411892.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQN31_RS02225 (NCTC10877_00436) - 421152..421508 (-) 357 WP_014407784.1 hypothetical protein -
  DQN31_RS02230 (NCTC10877_00437) - 421505..421924 (-) 420 WP_002983376.1 HIT family protein -
  DQN31_RS02235 (NCTC10877_00438) pptA 421996..422721 (+) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQN31_RS02240 (NCTC10877_00439) pptB 422724..423758 (+) 1035 WP_002994331.1 ABC transporter permease Regulator
  DQN31_RS02245 (NCTC10877_00440) ccrZ 423822..424613 (+) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQN31_RS02250 (NCTC10877_00441) trmB 424613..425248 (+) 636 WP_002983387.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQN31_RS02260 (NCTC10877_00443) rimP 425507..426043 (+) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQN31_RS02265 (NCTC10877_00444) nusA 426218..427375 (+) 1158 WP_002988817.1 transcription termination factor NusA -
  DQN31_RS02270 (NCTC10877_00445) rnpM 427391..427687 (+) 297 WP_002983486.1 RNase P modulator RnpM -
  DQN31_RS02275 (NCTC10877_00446) - 427680..427982 (+) 303 WP_002983488.1 YlxQ-related RNA-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40242.46 Da        Isoelectric Point: 10.3713

>NTDB_id=1024200 DQN31_RS02240 WP_002994331.1 422724..423758(+) (pptB) [Streptococcus pyogenes strain NCTC10877]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNVLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1024200 DQN31_RS02240 WP_002994331.1 422724..423758(+) (pptB) [Streptococcus pyogenes strain NCTC10877]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAGCAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAGCATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAACGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTATCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATGTGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427