Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QUR22_RS07280 Genome accession   NZ_CP162113
Coordinates   1529364..1530338 (-) Length   324 a.a.
NCBI ID   WP_000697223.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1524364..1535338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR22_RS07240 (QUR22_07235) gcvT 1524865..1525956 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  QUR22_RS07245 (QUR22_07240) - 1526115..1526639 (-) 525 WP_001015120.1 shikimate kinase -
  QUR22_RS07250 (QUR22_07245) - 1526629..1526775 (-) 147 WP_001789879.1 hypothetical protein -
  QUR22_RS07255 (QUR22_07250) comGF 1526872..1527369 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  QUR22_RS07260 (QUR22_07255) comGE 1527287..1527586 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QUR22_RS07265 (QUR22_07260) comGD 1527573..1528019 (-) 447 WP_216770765.1 competence type IV pilus minor pilin ComGD Machinery gene
  QUR22_RS07270 (QUR22_07265) comGC 1527997..1528308 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  QUR22_RS07275 (QUR22_07270) comGB 1528322..1529392 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  QUR22_RS07280 (QUR22_07275) comGA 1529364..1530338 (-) 975 WP_000697223.1 competence type IV pilus ATPase ComGA Machinery gene
  QUR22_RS07285 (QUR22_07280) - 1530390..1531013 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  QUR22_RS07290 (QUR22_07285) - 1531010..1531339 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QUR22_RS07295 (QUR22_07290) - 1531339..1532325 (-) 987 WP_000161307.1 ROK family glucokinase -
  QUR22_RS07300 (QUR22_07295) - 1532322..1532525 (-) 204 WP_000087561.1 YqgQ family protein -
  QUR22_RS07305 (QUR22_07300) - 1532506..1533969 (-) 1464 WP_001017870.1 rhomboid family intramembrane serine protease -
  QUR22_RS07310 (QUR22_07305) - 1533981..1534520 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  QUR22_RS07315 (QUR22_07310) rpmG 1534729..1534878 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36926.01 Da        Isoelectric Point: 8.8516

>NTDB_id=1024110 QUR22_RS07280 WP_000697223.1 1529364..1530338(-) (comGA) [Staphylococcus aureus strain BSN10]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQVTNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=1024110 QUR22_RS07280 WP_000697223.1 1529364..1530338(-) (comGA) [Staphylococcus aureus strain BSN10]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGACTTGATGTATCTACACAACAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTGATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGTAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997

Multiple sequence alignment