Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QUR22_RS07265 Genome accession   NZ_CP162113
Coordinates   1527573..1528019 (-) Length   148 a.a.
NCBI ID   WP_216770765.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1522573..1533019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUR22_RS07235 (QUR22_07230) gcvPA 1523499..1524845 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QUR22_RS07240 (QUR22_07235) gcvT 1524865..1525956 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  QUR22_RS07245 (QUR22_07240) - 1526115..1526639 (-) 525 WP_001015120.1 shikimate kinase -
  QUR22_RS07250 (QUR22_07245) - 1526629..1526775 (-) 147 WP_001789879.1 hypothetical protein -
  QUR22_RS07255 (QUR22_07250) comGF 1526872..1527369 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  QUR22_RS07260 (QUR22_07255) comGE 1527287..1527586 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QUR22_RS07265 (QUR22_07260) comGD 1527573..1528019 (-) 447 WP_216770765.1 competence type IV pilus minor pilin ComGD Machinery gene
  QUR22_RS07270 (QUR22_07265) comGC 1527997..1528308 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  QUR22_RS07275 (QUR22_07270) comGB 1528322..1529392 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  QUR22_RS07280 (QUR22_07275) comGA 1529364..1530338 (-) 975 WP_000697223.1 competence type IV pilus ATPase ComGA Machinery gene
  QUR22_RS07285 (QUR22_07280) - 1530390..1531013 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  QUR22_RS07290 (QUR22_07285) - 1531010..1531339 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QUR22_RS07295 (QUR22_07290) - 1531339..1532325 (-) 987 WP_000161307.1 ROK family glucokinase -
  QUR22_RS07300 (QUR22_07295) - 1532322..1532525 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17078.26 Da        Isoelectric Point: 10.1011

>NTDB_id=1024107 QUR22_RS07265 WP_216770765.1 1527573..1528019(-) (comGD) [Staphylococcus aureus strain BSN10]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRICYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1024107 QUR22_RS07265 WP_216770765.1 1527573..1528019(-) (comGD) [Staphylococcus aureus strain BSN10]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTTGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment