Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AB2S62_RS12415 Genome accession   NZ_CP162100
Coordinates   2771300..2771914 (+) Length   204 a.a.
NCBI ID   WP_367987313.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2766300..2776914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS12395 (AB2S62_12155) - 2766632..2767549 (-) 918 WP_367987310.1 ABC transporter ATP-binding protein -
  AB2S62_RS12400 (AB2S62_12160) - 2767828..2769498 (-) 1671 WP_367989206.1 SulP family inorganic anion transporter -
  AB2S62_RS12405 (AB2S62_12165) can 2769743..2770411 (+) 669 WP_367987311.1 carbonate dehydratase -
  AB2S62_RS12410 (AB2S62_12170) hpt 2770470..2771000 (-) 531 WP_367987312.1 hypoxanthine phosphoribosyltransferase -
  AB2S62_RS12415 (AB2S62_12175) opaR 2771300..2771914 (+) 615 WP_367987313.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  AB2S62_RS12420 (AB2S62_12180) lpdA 2772015..2773442 (-) 1428 WP_367987314.1 dihydrolipoyl dehydrogenase -
  AB2S62_RS12425 (AB2S62_12185) aceF 2773711..2775600 (-) 1890 WP_367987315.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23646.94 Da        Isoelectric Point: 5.9326

>NTDB_id=1024047 AB2S62_RS12415 WP_367987313.1 2771300..2771914(+) (opaR) [Vibrio sp. NTOU-M3]
MDTIAKRPRTRLSPQKRKQQLMEISLEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDLPARENLQNLTSAMVELVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVKAIERGEVCDEHDPA
DLATLFHGICYSLFVQSNRVHNQKAIEKLTQSYLDMLCIYKHDQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1024047 AB2S62_RS12415 WP_367987313.1 2771300..2771914(+) (opaR) [Vibrio sp. NTOU-M3]
ATGGACACAATAGCTAAAAGACCGCGAACCCGTCTTTCTCCACAAAAACGTAAGCAACAACTGATGGAAATTTCATTAGA
AGTGTTTGCTCGTAGAGGAATTGGGCGTGGTGGTCACGCCGATATTGCTGAAATCGCTCAGGTTTCAGTTGCAACGGTAT
TTAACTACTTCCCAACTCGAGAAGACTTAGTTGACGACGTTCTCAATTATGTAGTTCGTCAATTCTCTAACTTCTTATCA
GACAACATTGACCTCGACTTACCTGCTCGTGAGAATTTACAAAATCTCACTTCAGCGATGGTTGAGCTTGTCGTCAATGA
CTGCCACTGGCTAAAAGTATGGTTTGAATGGAGTGCATCAACACGTGATGAAGTTTGGCCGTTATTTGTAACGACTAACC
GTACCAACCAACTTCTAGTACAAAATATGTTTGTCAAAGCAATAGAACGTGGTGAAGTATGTGATGAGCACGATCCTGCA
GATCTTGCGACGCTTTTCCACGGTATCTGCTACTCATTGTTTGTTCAATCAAACCGAGTACATAACCAAAAAGCGATTGA
GAAACTCACTCAAAGCTACCTAGATATGCTTTGCATTTACAAGCATGATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(25-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.373

100

0.814
  hapR Vibrio cholerae C6706

76

98.039

0.745
  hapR Vibrio cholerae strain A1552

76

98.039

0.745

Multiple sequence alignment