Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AB2S62_RS10800 Genome accession   NZ_CP162100
Coordinates   2395437..2396831 (-) Length   464 a.a.
NCBI ID   WP_367987014.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390437..2401831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS10760 (AB2S62_10520) nrtS 2390912..2391112 (-) 201 WP_367987007.1 nitrate/nitrite transporter NrtS -
  AB2S62_RS10765 (AB2S62_10525) moaE 2391167..2391625 (-) 459 WP_367987008.1 molybdopterin synthase catalytic subunit MoaE -
  AB2S62_RS10770 (AB2S62_10530) moaD 2391627..2391872 (-) 246 WP_367987009.1 molybdopterin synthase sulfur carrier subunit -
  AB2S62_RS10775 (AB2S62_10535) moaC 2391869..2392348 (-) 480 WP_367987010.1 cyclic pyranopterin monophosphate synthase MoaC -
  AB2S62_RS10780 (AB2S62_10540) moaB 2392360..2392872 (-) 513 WP_239865573.1 molybdenum cofactor biosynthesis protein B -
  AB2S62_RS10785 (AB2S62_10545) moaA 2392942..2393931 (-) 990 WP_367987011.1 GTP 3',8-cyclase MoaA -
  AB2S62_RS10790 (AB2S62_10550) - 2394219..2395106 (+) 888 WP_367987012.1 YvcK family protein -
  AB2S62_RS10795 (AB2S62_10555) luxU 2395092..2395430 (-) 339 WP_367987013.1 quorum-sensing phosphorelay protein LuxU -
  AB2S62_RS10800 (AB2S62_10560) luxO 2395437..2396831 (-) 1395 WP_367987014.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AB2S62_RS10805 (AB2S62_10565) uvrB 2397110..2399140 (-) 2031 WP_367987015.1 excinuclease ABC subunit UvrB -
  AB2S62_RS10815 (AB2S62_10575) - 2400280..2401233 (+) 954 WP_367987016.1 multiprotein-bridging factor 1 family protein -
  AB2S62_RS10820 (AB2S62_10580) - 2401280..2401705 (-) 426 WP_367987017.1 transcriptional regulator -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51481.72 Da        Isoelectric Point: 5.5348

>NTDB_id=1024044 AB2S62_RS10800 WP_367987014.1 2395437..2396831(-) (luxO) [Vibrio sp. NTOU-M3]
MQHSSHSTKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESVSARTPDLILLDLRLPDMTGMDVLYEVKQRD
SDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEAGNPGNQSYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLTPDVVERFTRYEWPGNVRQLQNVLRNVVVLNNGKDISFDMLPPPLNIPGENEI
RMPIQAKEAVSVHDIFPLWMTEKNAIEQAIEACDGNIPKAAGYLDVSPSTIYRKLQAWNTKEAQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1024044 AB2S62_RS10800 WP_367987014.1 2395437..2396831(-) (luxO) [Vibrio sp. NTOU-M3]
ATGCAACATTCATCTCACTCTACAAAGTCAAAATATCTATTGATGGTGGAAGATACGGCTTCTGTTGCGGCATTGTATCG
TTCGTACCTCACACCACTTGGGATAGATATCAATATCGTTGGGACAGGGCGAGACGCTATCGAAAGTGTTTCTGCGCGTA
CACCAGACTTAATTTTGCTTGATTTGCGCTTGCCTGATATGACCGGGATGGATGTGCTTTATGAAGTGAAACAAAGAGAT
TCTGATGTACCAGTGATCTTTATGACGGCACATGGTTCCATCGATACAGCAGTAGAAGCCATGCGTCATGGTGCACAAGA
CTTTTTGATTAAACCGTGTGAAGCTGACCGCTTACGTGTGACCGTCAATAACGCAATTCGTAAAGCCACCAAATTAAAAA
ATGAAGCTGGTAACCCGGGAAATCAAAGCTATCAGGGTTTTATCGGTAGTAGCCAGACGATGCAAGCGGTCTATCGAACC
ATAGATTCAGCAGCGAGCAGTAAGGCGAGTATCTTCATCACCGGAGAGAGTGGTACGGGTAAAGAGGTGTGTGCTGAGGC
CATCCATGCTGCGAGCCGTCGCGGAGACAAGCCATTCATTGCCATTAACTGTGCTGCGATACCAAAAGATTTGATCGAAA
GTGAGTTGTTTGGCCACGTCAAAGGGGCATTTACCGGTGCAGCCACCGATCGTCAAGGCGCGGCAGAATTGGCTGACGGA
GGAACCCTGTTTCTGGATGAACTGTGTGAAATGGACTTAGATCTGCAAACTAAGTTATTGCGATTTATCCAAACAGGTAC
GTTTCAGAAAGTAGGTTCATCGAAAATGAAAAGCGTTGATGTACGGTTTGTTTGTGCCACGAACCGTGATCCTTGGAAGG
AAGTTCAAGAAGGGCGTTTTCGAGAAGACCTATATTACCGATTGTATGTTATTCCTTTACATTTACCGCCACTGCGTGAA
CGGGGTGATGATGTCATAGAAATTGCTTACTCATTATTAGGCTTTATGTCGAAAGAGGAAGGTAAAGACTTTGTTCGTCT
GACGCCAGATGTAGTTGAGCGCTTCACCCGTTATGAATGGCCGGGGAATGTGCGTCAGCTGCAAAATGTATTACGTAACG
TGGTGGTGCTTAATAACGGAAAAGATATCAGCTTTGATATGTTGCCACCGCCATTGAACATTCCGGGAGAAAATGAAATC
CGTATGCCGATTCAAGCAAAAGAAGCTGTTTCAGTACACGACATTTTCCCGCTGTGGATGACAGAAAAAAATGCAATTGA
ACAAGCTATTGAGGCCTGCGATGGGAATATTCCTAAAGCTGCAGGTTACCTCGATGTTAGTCCGTCAACAATCTATCGTA
AACTCCAAGCTTGGAACACGAAGGAAGCTCAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.892

96.121

0.845

Multiple sequence alignment