Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AB2S62_RS06850 Genome accession   NZ_CP162100
Coordinates   1468627..1470051 (-) Length   474 a.a.
NCBI ID   WP_367988945.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1463627..1475051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS06825 (AB2S62_06590) - 1464427..1464906 (+) 480 WP_367988940.1 response regulator -
  AB2S62_RS06830 (AB2S62_06595) - 1465175..1466383 (+) 1209 WP_367988941.1 HD-GYP domain-containing protein -
  AB2S62_RS06835 (AB2S62_06600) cdd 1466448..1467335 (-) 888 WP_367988942.1 cytidine deaminase -
  AB2S62_RS06840 (AB2S62_06605) - 1467536..1468213 (-) 678 WP_367988943.1 CidB/LrgB family autolysis modulator -
  AB2S62_RS06845 (AB2S62_06610) - 1468213..1468578 (-) 366 WP_367988944.1 CidA/LrgA family protein -
  AB2S62_RS06850 (AB2S62_06615) sbcB 1468627..1470051 (-) 1425 WP_367988945.1 exodeoxyribonuclease I Machinery gene
  AB2S62_RS06855 (AB2S62_06620) - 1470190..1471563 (-) 1374 WP_367988946.1 L-cystine transporter -
  AB2S62_RS06860 (AB2S62_06625) - 1471738..1472427 (-) 690 WP_367988947.1 NAD(P)H-binding protein -
  AB2S62_RS06865 (AB2S62_06630) - 1472915..1473526 (+) 612 WP_367988948.1 flavin reductase family protein -
  AB2S62_RS06870 (AB2S62_06635) cobT 1473535..1474563 (+) 1029 WP_367988949.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54818.26 Da        Isoelectric Point: 4.9511

>NTDB_id=1024041 AB2S62_RS06850 WP_367988945.1 1468627..1470051(-) (sbcB) [Vibrio sp. NTOU-M3]
MQQDRQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLIIYCQLPSDYLPSPEAALITGITPQTAMQNGLPEP
EFIAKIHAELATPNTINLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGYT
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKLKAAQPKLFDYFLNMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPTPLLELDSEQLQRRLYTKHADLAANELPVPIKLVHLNKCPILAPAKTLTAENAE
IIGIDREKCLQNLALLRQHPEIREKLIGLYNIEREYEKSNDVDTMLYDGFFSPADKAAMDIIRETEVNNLAALDISFNDK
RIEPLLFRYRARHYPWTLSESEQQRWASHSRDYFESRIEDYMLNLENLVHEYESDQKKIAILKSVYQYVEKLIS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1024041 AB2S62_RS06850 WP_367988945.1 1468627..1470051(-) (sbcB) [Vibrio sp. NTOU-M3]
ATGCAGCAAGATCGCCAGCCTACCTTCTTTTTCTTCGACTATGAGACATGGGGGACCAGCCCAGCGAAAGATCGTCCAAG
TCAGTTTGCTGGCGTACGCACCGATATGGACTTTAATATCATTGGCGAACCCTTGATTATTTATTGCCAGCTTCCTTCTG
ATTACCTCCCATCCCCTGAAGCGGCACTAATTACTGGTATTACACCTCAAACCGCGATGCAAAACGGGCTGCCAGAGCCT
GAGTTTATTGCCAAGATCCACGCTGAACTTGCCACACCTAATACCATTAACCTCGGTTACAACAGCATTCGCTTTGATGA
TGAAGTGACACGTTATACCTGCTACCGCAATTTTCTTGATCCGTATGCATGGAGCTGGCAAAACGGAAACTCGCGTTGGG
ACTTATTAGACGTAATGCGCGCGTGTCATGCACTTCGTCCGGAAGGCGTCGAATGGCCTGAAAATGATGAAGGTTATACC
AGTTTTAAGTTGGAACACTTATCTGTTGCCAATGGTATCGAACACGAGAATGCGCACGATGCCATGGCTGATGTCATCGC
AACCATAGAAATGGCGAAGAAGCTGAAAGCCGCCCAGCCAAAGCTATTCGATTACTTCCTCAACATGCGCCATAAACGCA
AGCTGAATGAGTTAGTGGATATCGTAAACATGACACCACTGATGCATGTCTCCGGGATGCTTGGGCGTGAATGCAATTAC
ACCAGTTGGGTGGTTCCCGTTGCTTGGCACCCAACTAACCAAAATGCCGTCATTGTGGTCGATTTGGCAAAAGATCCAAC
CCCATTACTTGAGCTTGACTCTGAGCAGCTGCAACGACGCCTATACACGAAACATGCTGATTTAGCCGCAAATGAGCTAC
CCGTCCCTATTAAGCTCGTGCACCTGAATAAATGCCCAATCCTTGCACCTGCAAAAACACTTACCGCTGAAAATGCAGAA
ATCATTGGGATTGATCGTGAGAAGTGTCTGCAGAACCTCGCCTTACTTCGCCAGCACCCAGAGATCAGAGAAAAGCTGAT
CGGTTTGTATAACATCGAACGCGAATATGAAAAGAGTAACGACGTAGACACTATGCTCTACGATGGCTTTTTCTCTCCAG
CCGATAAAGCCGCTATGGATATTATTCGCGAAACGGAAGTAAACAACCTAGCGGCATTAGACATCTCGTTTAATGATAAG
CGCATTGAACCCCTATTATTCCGCTACCGTGCTAGACATTATCCATGGACGCTCAGTGAATCAGAACAACAACGCTGGGC
ATCTCATAGCCGAGATTATTTCGAAAGTCGTATTGAAGATTACATGTTGAATCTGGAAAACTTAGTTCACGAATATGAAA
GTGATCAAAAGAAGATCGCTATTTTAAAATCCGTTTATCAATACGTTGAGAAGCTCATTTCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.085

99.578

0.797

Multiple sequence alignment