Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3G27_RS11035 Genome accession   NZ_CP162095
Coordinates   2203112..2204848 (-) Length   578 a.a.
NCBI ID   WP_137054990.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2198112..2209848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS11015 (AB3G27_11015) - 2199094..2199291 (-) 198 WP_368196513.1 hypothetical protein -
  AB3G27_RS11020 (AB3G27_11020) - 2199552..2200313 (-) 762 WP_137054992.1 hypothetical protein -
  AB3G27_RS11025 (AB3G27_11025) spo0A 2200547..2201350 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  AB3G27_RS11030 (AB3G27_11030) spoIVB 2201636..2202913 (-) 1278 WP_106033130.1 SpoIVB peptidase -
  AB3G27_RS11035 (AB3G27_11035) recN 2203112..2204848 (-) 1737 WP_137054990.1 DNA repair protein RecN Machinery gene
  AB3G27_RS11040 (AB3G27_11040) argR 2204882..2205331 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  AB3G27_RS11045 (AB3G27_11045) - 2205491..2206345 (-) 855 WP_137054989.1 TlyA family RNA methyltransferase -
  AB3G27_RS11050 (AB3G27_11050) dxs 2206342..2208243 (-) 1902 WP_368196518.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB3G27_RS11055 (AB3G27_11055) - 2208394..2209284 (-) 891 WP_003215768.1 polyprenyl synthetase family protein -
  AB3G27_RS11060 (AB3G27_11060) - 2209274..2209534 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64829.63 Da        Isoelectric Point: 4.8146

>NTDB_id=1023991 AB3G27_RS11035 WP_137054990.1 2203112..2204848(-) (recN) [Bacillus pumilus strain LBUM494]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEHGIDATDEMMILRRDMNNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1023991 AB3G27_RS11035 WP_137054990.1 2203112..2204848(-) (recN) [Bacillus pumilus strain LBUM494]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACAGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCCATCATGATTGATGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTGCCAGCAGCTGACCACCCTGTATTTGCTTTA
TGCGAAGAGCATGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATGAACAATAACGGGAAAAGCATATG
CCGCATCAATGGCAAGCTCGTTACAATCTCTCTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTG
TCACAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAACGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCGAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCAGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGTCTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAAAAATCAACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCGGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTACTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAACTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.74

100

0.747

Multiple sequence alignment