Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB3G27_RS11025 Genome accession   NZ_CP162095
Coordinates   2200547..2201350 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain LBUM494     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2195547..2206350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS11000 (AB3G27_11000) - 2196772..2197008 (+) 237 WP_050943781.1 DUF2627 domain-containing protein -
  AB3G27_RS11005 (AB3G27_11005) - 2197043..2197780 (-) 738 WP_137054993.1 glycerophosphodiester phosphodiesterase -
  AB3G27_RS11010 (AB3G27_11010) - 2198006..2199106 (-) 1101 WP_368196511.1 tetratricopeptide repeat protein -
  AB3G27_RS11015 (AB3G27_11015) - 2199094..2199291 (-) 198 WP_368196513.1 hypothetical protein -
  AB3G27_RS11020 (AB3G27_11020) - 2199552..2200313 (-) 762 WP_137054992.1 hypothetical protein -
  AB3G27_RS11025 (AB3G27_11025) spo0A 2200547..2201350 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  AB3G27_RS11030 (AB3G27_11030) spoIVB 2201636..2202913 (-) 1278 WP_106033130.1 SpoIVB peptidase -
  AB3G27_RS11035 (AB3G27_11035) recN 2203112..2204848 (-) 1737 WP_137054990.1 DNA repair protein RecN Machinery gene
  AB3G27_RS11040 (AB3G27_11040) argR 2204882..2205331 (-) 450 WP_003215836.1 transcriptional regulator ArgR -
  AB3G27_RS11045 (AB3G27_11045) - 2205491..2206345 (-) 855 WP_137054989.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=1023990 AB3G27_RS11025 WP_003215740.1 2200547..2201350(-) (spo0A) [Bacillus pumilus strain LBUM494]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1023990 AB3G27_RS11025 WP_003215740.1 2200547..2201350(-) (spo0A) [Bacillus pumilus strain LBUM494]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTAACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATCTAGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACAACGATT
ATTCATGAGATTGGCGTCCCGGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCAAG
CTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884

Multiple sequence alignment