Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQN54_RS08135 Genome accession   NZ_LS483417
Coordinates   1536723..1537319 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531723..1542319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS08115 (NCTC11902_01561) - 1532654..1533358 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  DQN54_RS08120 (NCTC11902_01562) - 1533449..1534060 (-) 612 WP_000804595.1 NUDIX hydrolase N-terminal domain-containing protein -
  DQN54_RS08125 (NCTC11902_01563) - 1534047..1535420 (-) 1374 WP_000778698.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQN54_RS08130 (NCTC11902_01564) - 1535504..1536547 (-) 1044 WP_000814647.1 D-alanine--D-alanine ligase -
  DQN54_RS08135 (NCTC11902_01565) recR 1536723..1537319 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  DQN54_RS08140 (NCTC11902_01566) pbp2b 1537330..1539387 (-) 2058 WP_074192806.1 penicillin-binding protein 2B -
  DQN54_RS08145 (NCTC11902_01567) - 1539587..1540438 (+) 852 WP_000360336.1 MurR/RpiR family transcriptional regulator -
  DQN54_RS08150 (NCTC11902_01568) - 1540454..1541338 (-) 885 WP_000222983.1 ROK family protein -
  DQN54_RS08155 (NCTC11902_01569) - 1541356..1542273 (-) 918 WP_001281507.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=1023931 DQN54_RS08135 WP_000966743.1 1536723..1537319(-) (recR) [Streptococcus pneumoniae strain NCTC11902]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1023931 DQN54_RS08135 WP_000966743.1 1536723..1537319(-) (recR) [Streptococcus pneumoniae strain NCTC11902]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAAGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485