Detailed information NTG1023689

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3M40_RS21875
• Genome accession: NZ_CP162024
• Coordinates: 4469845..4470645 (+)
• Length: 266 a.a.
• NCBI ID: WP_008807384.1
• Uniprot ID: A0A0J4LMF2
• Organism: Klebsiella variicola strain FS2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4464845..4475645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3M40_RS21840 (AB3M40_21840)	gspH	4464998..4465513 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AB3M40_RS21845 (AB3M40_21845)	gspI	4465510..4465875 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AB3M40_RS21850 (AB3M40_21850)	gspJ	4465872..4466468 (+)	597	WP_008807379.1	type II secretion system minor pseudopilin GspJ	-
AB3M40_RS21855 (AB3M40_21855)	gspK	4466465..4467445 (+)	981	WP_012542824.1	type II secretion system minor pseudopilin GspK	-
AB3M40_RS21860 (AB3M40_21860)	gspL	4467438..4468634 (+)	1197	WP_032740434.1	type II secretion system protein GspL	-
AB3M40_RS21865 (AB3M40_21865)	-	4468627..4469112 (+)	486	WP_012968921.1	type II secretion system protein M	-
AB3M40_RS21870 (AB3M40_21870)	-	4469102..4469848 (+)	747	WP_032740433.1	type II secretion system protein N	-
AB3M40_RS21875 (AB3M40_21875)	pilD	4469845..4470645 (+)	801	WP_008807384.1	A24 family peptidase	Machinery gene
AB3M40_RS21880 (AB3M40_21880)	hrpB	4470692..4473121 (-)	2430	WP_032740432.1	ATP-dependent helicase HrpB	-
AB3M40_RS21885 (AB3M40_21885)	thpR	4473194..4473730 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AB3M40_RS21890 (AB3M40_21890)	sfsA	4473730..4474446 (+)	717	WP_022066362.1	DNA/RNA nuclease SfsA	-
AB3M40_RS21895 (AB3M40_21895)	dksA	4474609..4475064 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.14 Da
• Isoelectric Point: 8.7151

>NTDB_id=1023689 AB3M40_RS21875 WP_008807384.1 4469845..4470645(+) (pilD) [Klebsiella variicola strain FS2]
MTTLTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1023689 AB3M40_RS21875 WP_008807384.1 4469845..4470645(+) (pilD) [Klebsiella variicola strain FS2]
ATGACGACATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

3D structure

• AlphaFold DB: A0A0J4LMF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425