Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABVK60_RS08585 Genome accession   NZ_CP162014
Coordinates   1712292..1712888 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei subsp. paracasei strain BS2-PB5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1707292..1717888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVK60_RS08555 (ABVK60_08560) - 1707358..1707753 (+) 396 WP_016363285.1 hypothetical protein -
  ABVK60_RS08560 (ABVK60_08565) - 1708150..1708743 (+) 594 WP_016374969.1 TMEM175 family protein -
  ABVK60_RS08565 (ABVK60_08570) - 1708816..1709010 (-) 195 WP_003568474.1 hypothetical protein -
  ABVK60_RS08570 (ABVK60_08575) cydB 1709037..1710056 (-) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  ABVK60_RS08575 (ABVK60_08580) - 1710049..1711527 (-) 1479 WP_019911508.1 cytochrome ubiquinol oxidase subunit I -
  ABVK60_RS08580 (ABVK60_08585) rpsR 1711969..1712205 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  ABVK60_RS08585 (ABVK60_08590) ssb 1712292..1712888 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  ABVK60_RS08590 (ABVK60_08595) rpsF 1712919..1713215 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  ABVK60_RS08595 (ABVK60_08600) ssb 1713343..1713774 (-) 432 WP_270759707.1 single-stranded DNA-binding protein -
  ABVK60_RS08600 (ABVK60_08605) deoC 1714081..1714785 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  ABVK60_RS08605 (ABVK60_08610) gyrA 1714890..1717511 (-) 2622 WP_367766062.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=1023551 ABVK60_RS08585 WP_003568462.1 1712292..1712888(-) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain BS2-PB5]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1023551 ABVK60_RS08585 WP_003568462.1 1712292..1712888(-) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain BS2-PB5]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACGAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGTGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAGGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment