Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABVK60_RS03490 Genome accession   NZ_CP162014
Coordinates   664770..665255 (-) Length   161 a.a.
NCBI ID   WP_367766882.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. paracasei strain BS2-PB5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 659770..670255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVK60_RS03420 (ABVK60_03420) - 659909..660328 (-) 420 WP_367766862.1 YopX family protein -
  ABVK60_RS03425 (ABVK60_03425) - 660339..660569 (-) 231 WP_367766864.1 hypothetical protein -
  ABVK60_RS03430 (ABVK60_03430) - 660572..660817 (-) 246 WP_016385959.1 hypothetical protein -
  ABVK60_RS03435 (ABVK60_03435) - 660814..661230 (-) 417 WP_367766866.1 hypothetical protein -
  ABVK60_RS03440 (ABVK60_03440) - 661220..661435 (-) 216 WP_367766868.1 hypothetical protein -
  ABVK60_RS03445 (ABVK60_03445) - 661425..661946 (-) 522 WP_367766872.1 DUF1642 domain-containing protein -
  ABVK60_RS03450 (ABVK60_03450) - 661943..662353 (-) 411 WP_289442616.1 hypothetical protein -
  ABVK60_RS03455 (ABVK60_03455) - 662350..662613 (-) 264 WP_367766875.1 hypothetical protein -
  ABVK60_RS03460 (ABVK60_03460) - 662625..663089 (-) 465 WP_367766877.1 endonuclease -
  ABVK60_RS03465 (ABVK60_03465) - 663109..663492 (-) 384 WP_308858306.1 DUF1064 domain-containing protein -
  ABVK60_RS03470 (ABVK60_03470) - 663495..663944 (-) 450 WP_367766879.1 hypothetical protein -
  ABVK60_RS03475 (ABVK60_03475) - 663941..664183 (-) 243 WP_019885624.1 helix-turn-helix transcriptional regulator -
  ABVK60_RS03480 (ABVK60_03480) - 664317..664586 (+) 270 WP_016377656.1 DUF3892 domain-containing protein -
  ABVK60_RS03485 (ABVK60_03485) - 664600..664755 (-) 156 WP_022671538.1 hypothetical protein -
  ABVK60_RS03490 (ABVK60_03490) ssb 664770..665255 (-) 486 WP_367766882.1 single-stranded DNA-binding protein Machinery gene
  ABVK60_RS03495 (ABVK60_03495) - 665268..666224 (-) 957 WP_367766884.1 DnaD domain protein -
  ABVK60_RS03500 (ABVK60_03500) - 666299..667225 (-) 927 WP_367766886.1 hypothetical protein -
  ABVK60_RS03505 (ABVK60_03505) - 667228..668124 (-) 897 WP_183406564.1 DUF1351 domain-containing protein -
  ABVK60_RS03510 (ABVK60_03510) - 668117..668290 (-) 174 WP_080671931.1 hypothetical protein -
  ABVK60_RS03515 (ABVK60_03515) - 668283..668534 (-) 252 WP_367766892.1 hypothetical protein -
  ABVK60_RS03520 (ABVK60_03520) - 668522..668650 (-) 129 WP_012491436.1 hypothetical protein -
  ABVK60_RS03525 (ABVK60_03525) - 668663..668884 (-) 222 WP_003582309.1 helix-turn-helix domain-containing protein -
  ABVK60_RS03530 (ABVK60_03530) - 668863..669411 (-) 549 WP_016377913.1 hypothetical protein -
  ABVK60_RS03535 (ABVK60_03535) - 669477..669635 (-) 159 WP_016377914.1 hypothetical protein -
  ABVK60_RS03540 (ABVK60_03540) - 669723..669932 (+) 210 WP_016373289.1 hypothetical protein -
  ABVK60_RS03545 (ABVK60_03545) - 669929..670240 (-) 312 WP_128517452.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17567.36 Da        Isoelectric Point: 6.9823

>NTDB_id=1023541 ABVK60_RS03490 WP_367766882.1 664770..665255(-) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain BS2-PB5]
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFISCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVFVTEVIVDNFALLESRQASQNSPKLPQTANTSATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1023541 ABVK60_RS03490 WP_367766882.1 664770..665255(-) (ssb) [Lacticaseibacillus paracasei subsp. paracasei strain BS2-PB5]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGACTTTATCAGTTGTGTGATCT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTTGAAGGCCATATCCAAACACGT
ACGTACGATAACGCGCAAGGGCAGAAAGTATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAGTCCTAAATTACCGCAAACAGCCAATACATCAGCGACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.791

100

0.671
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.516

Multiple sequence alignment