Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AB1N67_RS20915 Genome accession   NZ_CP162012
Coordinates   4516886..4517752 (+) Length   288 a.a.
NCBI ID   WP_043209636.1    Uniprot ID   A0AAX0VXF6
Organism   Pseudomonas guariconensis strain NY14324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4500658..4519806 4516886..4517752 within 0


Gene organization within MGE regions


Location: 4500658..4519806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N67_RS20840 (AB1N67_20840) - 4500658..4501095 (-) 438 WP_367863350.1 acetyltransferase -
  AB1N67_RS20845 (AB1N67_20845) - 4502169..4504175 (+) 2007 WP_367863351.1 ATP-binding domain-containing protein -
  AB1N67_RS20850 (AB1N67_20850) - 4504182..4504823 (+) 642 WP_049870065.1 hypothetical protein -
  AB1N67_RS20855 (AB1N67_20855) - 4504967..4505485 (-) 519 WP_173895566.1 hypothetical protein -
  AB1N67_RS20860 (AB1N67_20860) - 4506420..4508279 (-) 1860 WP_367863352.1 hypothetical protein -
  AB1N67_RS20865 (AB1N67_20865) - 4509228..4509470 (+) 243 WP_008091975.1 hypothetical protein -
  AB1N67_RS20870 (AB1N67_20870) - 4509463..4510389 (+) 927 WP_367863353.1 site-specific integrase -
  AB1N67_RS20875 (AB1N67_20875) - 4510386..4510874 (+) 489 WP_367863354.1 hypothetical protein -
  AB1N67_RS20880 (AB1N67_20880) trfA 4511535..4512422 (-) 888 WP_367863355.1 plasmid replication initiator TrfA -
  AB1N67_RS20885 (AB1N67_20885) - 4512455..4512658 (-) 204 WP_367863356.1 helix-turn-helix transcriptional regulator -
  AB1N67_RS20890 (AB1N67_20890) - 4512778..4513515 (-) 738 WP_367863357.1 hypothetical protein -
  AB1N67_RS20895 (AB1N67_20895) - 4513512..4514723 (-) 1212 WP_367863358.1 tyrosine-type recombinase/integrase -
  AB1N67_RS20905 (AB1N67_20905) - 4515047..4515457 (-) 411 WP_367863359.1 pilin -
  AB1N67_RS20910 (AB1N67_20910) - 4515676..4516884 (+) 1209 WP_367863360.1 type II secretion system F family protein -
  AB1N67_RS20915 (AB1N67_20915) pilD 4516886..4517752 (+) 867 WP_043209636.1 A24 family peptidase Machinery gene
  AB1N67_RS20920 (AB1N67_20920) coaE 4517752..4518375 (+) 624 WP_043209638.1 dephospho-CoA kinase -
  AB1N67_RS20925 (AB1N67_20925) yacG 4518372..4518572 (+) 201 WP_367863361.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31972.20 Da        Isoelectric Point: 7.5587

>NTDB_id=1023529 AB1N67_RS20915 WP_043209636.1 4516886..4517752(+) (pilD) [Pseudomonas guariconensis strain NY14324]
MNLWIVFANQPVLFLTFAGLLGLLLGSFINVLAYRLPIMLERQWQREAQEVLGLPVVTHERFDLCLPASRCSHCGHRIRA
WENIPVLSYLWLRGRCSACKVAIDARYPLVELGCAVLSIVVAWHFGPSLQALFALLLTWCLLSLSLIDADHQLLPDVLVM
PTLWLGLLCNAFGLFTPLPDALWGAAIGYLSLWGVYWLFKLLTGKEGLGYGDFKLLALIGAWGGWQVLPLTLVMSSVVGA
VIGLCLLRLRRASMGSAMPFGPYLAIAGWIAVLWGDEMYVSYLQLFGH

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1023529 AB1N67_RS20915 WP_043209636.1 4516886..4517752(+) (pilD) [Pseudomonas guariconensis strain NY14324]
ATGAATCTTTGGATTGTTTTCGCCAATCAGCCGGTGCTGTTTCTGACCTTCGCCGGGCTGCTGGGGCTGTTGCTCGGCAG
CTTCATCAATGTGCTGGCGTATCGCTTGCCGATCATGCTCGAGCGTCAGTGGCAGCGCGAGGCGCAGGAGGTGCTGGGCC
TGCCGGTGGTGACGCATGAGCGCTTCGACCTGTGCCTGCCGGCCTCGCGCTGCTCCCATTGCGGCCATCGCATTCGCGCC
TGGGAGAACATCCCGGTACTGAGCTATCTGTGGCTGCGCGGTCGCTGCTCGGCGTGCAAGGTTGCCATCGATGCACGTTA
TCCGTTGGTGGAGCTGGGCTGTGCAGTTCTTTCGATAGTGGTGGCCTGGCATTTCGGGCCGTCGCTGCAAGCGTTGTTCG
CCCTGTTGTTGACCTGGTGCCTGCTGAGCCTGAGCTTGATCGATGCAGACCACCAACTGCTGCCCGATGTACTGGTGATG
CCCACGCTCTGGCTGGGGCTGTTGTGCAATGCCTTTGGCCTGTTCACGCCTTTGCCCGATGCGCTCTGGGGTGCGGCCAT
CGGCTATCTGAGCCTTTGGGGGGTGTATTGGCTATTCAAGCTGCTCACTGGCAAGGAAGGGCTGGGCTATGGCGACTTCA
AGTTGCTGGCCTTGATCGGCGCCTGGGGCGGTTGGCAGGTATTGCCGTTGACGCTGGTAATGTCATCGGTGGTGGGGGCG
GTGATTGGGCTGTGCCTGTTGCGCTTGCGCCGAGCATCGATGGGGTCGGCCATGCCGTTTGGGCCGTATCTGGCCATTGC
GGGCTGGATCGCAGTGCTCTGGGGTGATGAAATGTACGTCTCCTACCTGCAACTGTTTGGACACTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.264

96.181

0.493
  pilD Acinetobacter baumannii D1279779

50.542

96.181

0.486
  pilD Acinetobacter nosocomialis M2

49.819

96.181

0.479
  pilD Vibrio campbellii strain DS40M4

48.913

95.833

0.469
  pilD Neisseria gonorrhoeae MS11

47.348

91.667

0.434

Multiple sequence alignment