Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB3F25_RS09055 Genome accession   NZ_CP162010
Coordinates   1910014..1910667 (-) Length   217 a.a.
NCBI ID   WP_373604365.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905014..1915667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS09055 (AB3F25_09050) sxy/tfoX 1910014..1910667 (-) 654 WP_373604365.1 TfoX/Sxy family DNA transformation protein Regulator
  AB3F25_RS09060 (AB3F25_09055) - 1910938..1912083 (+) 1146 WP_373603493.1 DUF2827 family protein -
  AB3F25_RS09065 (AB3F25_09060) glpE 1912230..1912547 (-) 318 WP_373603494.1 thiosulfate sulfurtransferase GlpE -
  AB3F25_RS09070 (AB3F25_09065) rarD 1912551..1913426 (-) 876 WP_373603495.1 EamA family transporter RarD -
  AB3F25_RS09075 (AB3F25_09070) ilvY 1913458..1914336 (-) 879 WP_373603496.1 HTH-type transcriptional activator IlvY -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25170.53 Da        Isoelectric Point: 10.5509

>NTDB_id=1023502 AB3F25_RS09055 WP_373604365.1 1910014..1910667(-) (sxy/tfoX) [Aggregatibacter sp. HMT-949 strain W10649]
MNVQDERIESVCLRADRLIGNVTSRNLFTGYGLFYKKEFMFALWLNGKFYLQAKNELAQQLMRSGCSPFTTNEVNRRFVL
ADYYRLSSNIMGDESLLRKLFMLSIKQIQERRNALALSKANRLKELPNLSIKYERMLKKVDIPDVATLKSVGAENAIVRL
KKAGIPATLQTYWRIVAALHNKNCVLFTKSQKEILLKKLNEVLHKAGFRKYRKVDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1023502 AB3F25_RS09055 WP_373604365.1 1910014..1910667(-) (sxy/tfoX) [Aggregatibacter sp. HMT-949 strain W10649]
TTGAATGTTCAAGATGAGCGTATTGAATCCGTTTGTTTACGAGCGGATAGATTAATTGGAAATGTGACATCCCGAAACCT
TTTTACCGGTTATGGGTTGTTTTATAAGAAGGAATTTATGTTCGCACTATGGTTAAACGGAAAATTTTATCTGCAAGCCA
AAAACGAACTCGCACAACAATTAATGCGTTCCGGTTGTTCGCCTTTTACCACGAACGAAGTCAATCGCAGGTTTGTTCTC
GCCGATTATTACCGATTGTCTTCTAATATTATGGGGGATGAGTCGTTATTGCGTAAATTATTTATGCTTTCTATTAAGCA
AATCCAAGAGAGAAGAAATGCGCTTGCATTATCTAAAGCGAATCGCTTGAAGGAGTTGCCTAATCTTTCGATAAAGTATG
AAAGAATGCTAAAGAAAGTGGATATTCCGGATGTCGCGACATTAAAATCGGTAGGTGCAGAAAATGCCATTGTACGTTTA
AAAAAAGCGGGCATTCCGGCAACACTGCAAACTTATTGGAGGATTGTTGCTGCGTTACACAATAAAAATTGTGTATTGTT
TACTAAATCACAAAAGGAGATTTTACTGAAAAAATTAAATGAGGTGCTACATAAAGCCGGTTTCAGAAAATACAGAAAAG
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(19-107)

TfoX C-terminal domain (TfoX_C)

(120-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

57.604

100

0.576

Multiple sequence alignment