Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DQN67_RS11700 Genome accession   NZ_LS483410
Coordinates   2590540..2591895 (-) Length   451 a.a.
NCBI ID   WP_027219255.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11404     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2585540..2596895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN67_RS11685 (NCTC11404_02324) pilU 2586280..2587401 (-) 1122 WP_027225181.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  DQN67_RS11690 (NCTC11404_02325) - 2587491..2589419 (-) 1929 WP_027225182.1 L-gulono-gamma-lactone oxidase -
  DQN67_RS11695 (NCTC11404_02326) - 2589707..2590543 (-) 837 WP_027225183.1 phytanoyl-CoA dioxygenase family protein -
  DQN67_RS11700 (NCTC11404_02327) radA/sms 2590540..2591895 (-) 1356 WP_027219255.1 DNA repair protein RadA Machinery gene
  DQN67_RS11705 (NCTC11404_02328) - 2592127..2593005 (+) 879 WP_027225184.1 lpg2327 family Dot/Icm T4SS effector -
  DQN67_RS11710 (NCTC11404_02329) - 2593269..2593652 (+) 384 WP_027225185.1 hypothetical protein -
  DQN67_RS11715 (NCTC11404_02330) - 2593846..2594076 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  DQN67_RS11720 (NCTC11404_02331) - 2594057..2594953 (+) 897 WP_027225186.1 polyprenyl synthetase family protein -
  DQN67_RS11725 (NCTC11404_02332) bioC 2594997..2595851 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  DQN67_RS11730 (NCTC11404_02333) comFC 2595895..2596599 (+) 705 WP_370696083.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48989.63 Da        Isoelectric Point: 7.7495

>NTDB_id=1023487 DQN67_RS11700 WP_027219255.1 2590540..2591895(-) (radA/sms) [Legionella pneumophila strain NCTC11404]
MMKVKTQFVCNQCAAIFKQWAGQCTQCGAWNSIVEEGIVPENKTSRSGQWANQRSVITAVEDVVMDKIVRMDCGISELNR
VLGGGLVYGSVVLIGGDPGIGKSTLLLQTLANLSMQETVLYVTGEESLQQVAMRAQRLGLPLAGLRLLAETQVESIIAQA
QKEKPRIIVVDSVQTIFTEAISSAPGGVSQVRESAAQLVRYAKMTNTAIFLVGHVTKEGTLAGPRVLEHMVDSVLYFEGQ
NDSRFRVIRAIKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRQPEPTPGSAVMVTWEGSRPMLVEVQALVDEAHGQQA
KRVTAGLEHNRLAILLAVLHRHGGIATYDQDVFINVVGGVKVTETASDLALLAAVISSLRNRIFDSETIIFGEVGLAGEI
RPVQSGQERIKEAIKHGFKRAIVPFANAPKQQLDSMTVEPVKHLRDVLEKM

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=1023487 DQN67_RS11700 WP_027219255.1 2590540..2591895(-) (radA/sms) [Legionella pneumophila strain NCTC11404]
ATTATGAAAGTGAAAACCCAGTTTGTTTGTAATCAATGCGCGGCCATTTTTAAACAGTGGGCAGGACAATGCACTCAATG
TGGCGCCTGGAATTCCATTGTTGAAGAAGGGATTGTGCCTGAAAACAAGACTTCACGAAGTGGGCAATGGGCTAATCAGC
GCTCTGTCATCACTGCTGTTGAAGACGTCGTCATGGACAAAATAGTACGTATGGATTGTGGTATATCCGAGCTCAACCGG
GTTTTGGGAGGGGGGCTGGTTTATGGCTCGGTTGTTTTGATTGGAGGAGATCCGGGGATCGGTAAATCCACCTTACTGTT
GCAAACGCTGGCTAATTTATCTATGCAAGAAACAGTATTGTATGTGACGGGGGAAGAGTCATTACAACAAGTTGCCATGC
GTGCCCAAAGATTGGGGCTACCTTTGGCCGGATTGCGGCTATTGGCAGAAACTCAGGTTGAATCCATCATTGCTCAAGCC
CAAAAGGAAAAACCGCGAATTATTGTCGTCGATTCAGTACAAACGATATTCACTGAAGCCATAAGTTCTGCTCCGGGAGG
AGTTAGTCAAGTCAGGGAATCAGCAGCACAATTGGTGCGTTATGCCAAGATGACCAATACGGCCATCTTCCTGGTAGGGC
ATGTCACCAAGGAAGGAACATTAGCCGGGCCTCGGGTGTTAGAACATATGGTTGATAGTGTTCTCTATTTTGAGGGGCAA
AATGATAGTCGCTTCAGAGTCATTCGCGCCATTAAAAATCGTTTTGGCGCTGTCAATGAATTAGGTGTATTTGCGATGAC
TGACAAAGGCCTGAAGGAGGTAGCCAACCCTTCAGCTATTTTTTTATCTCGCCAGCCCGAACCTACGCCTGGCAGTGCAG
TGATGGTGACTTGGGAAGGATCAAGACCCATGTTGGTAGAAGTACAAGCATTGGTTGATGAGGCCCATGGTCAGCAAGCG
AAACGCGTTACTGCGGGTCTTGAGCATAATCGCTTGGCCATTTTGTTAGCTGTTTTACACCGTCATGGAGGTATCGCTAC
TTACGATCAGGATGTTTTTATCAATGTAGTCGGGGGAGTAAAAGTGACTGAAACAGCGAGTGATTTGGCTTTGTTGGCTG
CAGTGATCTCAAGTTTACGTAATCGTATATTTGATAGTGAAACCATCATATTCGGTGAAGTGGGATTAGCCGGGGAAATC
AGGCCAGTGCAAAGTGGTCAAGAACGCATTAAGGAGGCTATAAAACATGGATTCAAGCGTGCTATAGTCCCTTTTGCCAA
CGCTCCCAAACAGCAACTCGATTCCATGACGGTCGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(329-427)

AAA domain (AAA_25)

(75-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.499

96.009

0.466
  radA Streptococcus pneumoniae Rx1

48.349

94.013

0.455
  radA Streptococcus pneumoniae D39

48.349

94.013

0.455
  radA Streptococcus pneumoniae R6

48.349

94.013

0.455
  radA Streptococcus pneumoniae TIGR4

48.349

94.013

0.455
  radA Streptococcus mitis SK321

48.349

94.013

0.455
  radA Streptococcus mitis NCTC 12261

48.113

94.013

0.452