Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   AB3F25_RS03330 Genome accession   NZ_CP162010
Coordinates   705252..705959 (+) Length   235 a.a.
NCBI ID   WP_373604093.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700252..710959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS03300 (AB3F25_03295) cpdA 700379..701203 (+) 825 WP_373604088.1 3',5'-cyclic-AMP phosphodiesterase -
  AB3F25_RS03305 (AB3F25_03300) ybeY 701482..701946 (+) 465 WP_373604089.1 rRNA maturation RNase YbeY -
  AB3F25_RS03310 (AB3F25_03305) - 701970..702755 (+) 786 WP_373604090.1 Cof-type HAD-IIB family hydrolase -
  AB3F25_RS03315 (AB3F25_03310) suhB 703039..703842 (-) 804 WP_373604091.1 inositol-1-monophosphatase -
  AB3F25_RS03320 (AB3F25_03315) comN 704042..704557 (+) 516 WP_373604092.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3F25_RS03325 (AB3F25_03320) comO 704593..705267 (+) 675 WP_373604315.1 hypothetical protein Machinery gene
  AB3F25_RS03330 (AB3F25_03325) comP 705252..705959 (+) 708 WP_373604093.1 DUF2572 family protein Machinery gene
  AB3F25_RS03335 (AB3F25_03330) comQ 705982..706239 (+) 258 WP_373604316.1 DUF5374 domain-containing protein Machinery gene
  AB3F25_RS03340 (AB3F25_03335) recC 706276..709668 (+) 3393 WP_373604094.1 exodeoxyribonuclease V subunit gamma -
  AB3F25_RS03345 (AB3F25_03340) nrdR 709725..710174 (+) 450 WP_373604095.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26644.62 Da        Isoelectric Point: 7.8025

>NTDB_id=1023483 AB3F25_RS03330 WP_373604093.1 705252..705959(+) (comP) [Aggregatibacter sp. HMT-949 strain W10649]
MESKINIGRNLEKGVITLSLLIFLSGLLTLALLFDDDLLSFFRAQQMQRQNYSERALLLQKMMQQEKQRLCSDLPLNKKI
AFRQVSTTLAGAEDMLQYSVWCRYAAIFKKTPLKPNNEGLLEQFVRSDDKADFKNEFASSSNPLVPTKEPQLYWFDKTQS
EREVNGDIAAVIIAEGDLKLHGKGTITGTVITGGELTLDGVTIAYSKKVVTPLVQQYNKWQLAEKSWSDFKPQNE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1023483 AB3F25_RS03330 WP_373604093.1 705252..705959(+) (comP) [Aggregatibacter sp. HMT-949 strain W10649]
ATGGAATCAAAAATAAATATAGGAAGAAATCTTGAAAAGGGTGTGATTACATTATCGCTGCTAATTTTTTTATCAGGCTT
GTTGACGCTGGCTTTACTCTTTGACGACGATTTATTAAGTTTTTTTCGCGCACAACAAATGCAACGTCAAAACTATTCGG
AAAGAGCGTTACTTTTACAAAAAATGATGCAACAAGAAAAGCAACGCCTATGTTCGGATTTACCTTTAAACAAGAAAATC
GCATTTCGACAAGTATCCACAACTTTGGCGGGGGCAGAAGATATGCTGCAATATTCAGTTTGGTGTCGGTATGCAGCGAT
ATTTAAAAAAACACCGTTAAAACCGAATAACGAAGGTTTGCTTGAACAGTTTGTACGAAGCGATGATAAGGCCGATTTTA
AAAATGAGTTCGCATCCTCATCAAATCCTTTGGTGCCAACCAAAGAACCTCAACTATATTGGTTTGATAAGACTCAATCC
GAACGGGAAGTCAATGGCGATATCGCGGCCGTTATCATCGCTGAAGGTGACCTTAAACTGCATGGTAAAGGCACGATTAC
CGGTACGGTGATCACCGGTGGAGAATTGACTCTTGATGGCGTCACAATCGCTTATAGTAAAAAAGTTGTTACGCCTTTAG
TGCAACAATACAACAAATGGCAATTAGCGGAGAAAAGTTGGAGTGATTTTAAACCTCAAAACGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(13-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

56.444

95.745

0.54

Multiple sequence alignment