Detailed information NTG1023370

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3G53_RS01590
• Genome accession: NZ_CP161999
• Coordinates: 336033..336893 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain SIMBA061
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 331033..341893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3G53_RS01565 (AB3G53_01565)	-	331924..333234 (+)	1311	WP_049081383.1	tetratricopeptide repeat protein	-
AB3G53_RS01570 (AB3G53_01570)	-	333311..333637 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AB3G53_RS01575 (AB3G53_01575)	rlmB	333739..334488 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB3G53_RS01580 (AB3G53_01580)	-	334524..335438 (+)	915	WP_000075014.1	DMT family transporter	-
AB3G53_RS01585 (AB3G53_01585)	coaE	335435..336031 (-)	597	WP_023897382.1	dephospho-CoA kinase	-
AB3G53_RS01590 (AB3G53_01590)	pilD	336033..336893 (-)	861	WP_001152273.1	A24 family peptidase	Machinery gene
AB3G53_RS01595 (AB3G53_01595)	pilC	336893..338119 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
AB3G53_RS01600 (AB3G53_01600)	pilB	338149..339861 (-)	1713	WP_031959606.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB3G53_RS01605 (AB3G53_01605)	tpiA	340152..340946 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
AB3G53_RS01610 (AB3G53_01610)	secG	340959..341288 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=1023370 AB3G53_RS01590 WP_001152273.1 336033..336893(-) (pilD) [Acinetobacter baumannii strain SIMBA061]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1023370 AB3G53_RS01590 WP_001152273.1 336033..336893(-) (pilD) [Acinetobacter baumannii strain SIMBA061]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441