Detailed information NTG1023228

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3G50_RS01605
• Genome accession: NZ_CP161989
• Coordinates: 325644..326504 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain SIMBA028
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 320644..331504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3G50_RS01580 (AB3G50_01580)	-	321536..322846 (+)	1311	WP_000753286.1	tetratricopeptide repeat protein	-
AB3G50_RS01585 (AB3G50_01585)	-	322923..323249 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AB3G50_RS01590 (AB3G50_01590)	rlmB	323351..324100 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AB3G50_RS01595 (AB3G50_01595)	-	324135..325049 (+)	915	WP_000075015.1	DMT family transporter	-
AB3G50_RS01600 (AB3G50_01600)	coaE	325046..325642 (-)	597	WP_031957987.1	dephospho-CoA kinase	-
AB3G50_RS01605 (AB3G50_01605)	pilD	325644..326504 (-)	861	WP_001152269.1	A24 family peptidase	Machinery gene
AB3G50_RS01610 (AB3G50_01610)	pilC	326504..327730 (-)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
AB3G50_RS01615 (AB3G50_01615)	pilB	327760..329472 (-)	1713	WP_031957988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB3G50_RS01620 (AB3G50_01620)	tpiA	329763..330557 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
AB3G50_RS01625 (AB3G50_01625)	secG	330570..330899 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=1023228 AB3G50_RS01605 WP_001152269.1 325644..326504(-) (pilD) [Acinetobacter baumannii strain SIMBA028]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1023228 AB3G50_RS01605 WP_001152269.1 325644..326504(-) (pilD) [Acinetobacter baumannii strain SIMBA028]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437