Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AB3G49_RS16285 Genome accession   NZ_CP161986
Coordinates   3409242..3410060 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain SIMBA003     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404242..3415060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G49_RS16270 (AB3G49_16270) pilE 3404459..3404884 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AB3G49_RS16275 (AB3G49_16275) pilY2 3404881..3405363 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  AB3G49_RS16280 (AB3G49_16280) pilY1 3405376..3409230 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  AB3G49_RS16285 (AB3G49_16285) pilX 3409242..3410060 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AB3G49_RS16290 (AB3G49_16290) pilW 3410057..3411058 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  AB3G49_RS16295 (AB3G49_16295) pilV 3411059..3411619 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AB3G49_RS16300 (AB3G49_16300) fimU 3411613..3412086 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AB3G49_RS16305 (AB3G49_16305) ispH 3412256..3413206 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AB3G49_RS16310 (AB3G49_16310) gmk 3413329..3413958 (+) 630 WP_000015936.1 guanylate kinase -
  AB3G49_RS16315 (AB3G49_16315) rpoZ 3414031..3414309 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AB3G49_RS16320 (AB3G49_16320) - 3414348..3414478 (+) 131 Protein_3181 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1023208 AB3G49_RS16285 WP_000149374.1 3409242..3410060(-) (pilX) [Acinetobacter baumannii strain SIMBA003]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1023208 AB3G49_RS16285 WP_000149374.1 3409242..3410060(-) (pilX) [Acinetobacter baumannii strain SIMBA003]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment