Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQM80_RS05615 Genome accession   NZ_LS483399
Coordinates   1097015..1097611 (-) Length   198 a.a.
NCBI ID   WP_011888787.1    Uniprot ID   A2RDV9
Organism   Streptococcus pyogenes strain NCTC8227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1092015..1102611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM80_RS05600 (NCTC8227_01123) - 1093511..1094206 (-) 696 WP_002983946.1 TIGR02206 family membrane protein -
  DQM80_RS05605 (NCTC8227_01124) - 1094286..1095677 (-) 1392 WP_111677348.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DQM80_RS05610 (NCTC8227_01125) - 1095868..1096914 (-) 1047 WP_023610118.1 D-alanine--D-alanine ligase -
  DQM80_RS05615 (NCTC8227_01126) recR 1097015..1097611 (-) 597 WP_011888787.1 recombination mediator RecR Machinery gene
  DQM80_RS05620 (NCTC8227_01127) - 1097623..1097838 (-) 216 WP_231873494.1 penicillin-binding protein -
  DQM80_RS05625 (NCTC8227_01128) - 1098398..1099177 (-) 780 WP_002989141.1 formate/nitrite transporter family protein -
  DQM80_RS05630 (NCTC8227_01129) - 1099301..1099843 (-) 543 WP_002989140.1 hypothetical protein -
  DQM80_RS05635 (NCTC8227_01130) - 1100004..1100525 (-) 522 WP_011017960.1 transcription repressor NadR -
  DQM80_RS05640 (NCTC8227_01131) - 1100632..1101327 (-) 696 WP_002983928.1 phosphoglycerate mutase -
  DQM80_RS05645 (NCTC8227_01132) - 1101566..1102501 (+) 936 WP_010922443.1 dihydroorotate oxidase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21695.89 Da        Isoelectric Point: 4.8889

>NTDB_id=1022894 DQM80_RS05615 WP_011888787.1 1097015..1097611(-) (recR) [Streptococcus pyogenes strain NCTC8227]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCHICTDTSRDQT
TILVVEDAKDVSAMEKIQEYRGYYHVLHGLISPMNGMGPDDINLKSLITRLMDGKVSEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1022894 DQM80_RS05615 WP_011888787.1 1097015..1097611(-) (recR) [Streptococcus pyogenes strain NCTC8227]
GTGCTTTATCCAACACCCATTGCAAAGTTAATTGACAGTTACTCTAAACTTCCAGGAATTGGTATCAAGACGGCGACGAG
ATTAGCCTTTTATACTATTGGAATGTCAAATGAAGATGTCAATGATTTTGCTAAAAATTTATTAGCAGCTAAAAGAGAAC
TGACCTATTGTTCGATTTGTGGAAACCTTACCGATGACGATCCTTGTCACATTTGCACAGACACGAGCCGTGATCAGACG
ACCATTCTGGTAGTAGAAGATGCTAAAGATGTTTCTGCCATGGAAAAAATCCAAGAGTATCGTGGCTATTATCATGTGCT
TCACGGCTTGATTTCGCCTATGAATGGTATGGGGCCAGATGACATCAACCTTAAAAGTTTAATTACCCGTCTAATGGATG
GTAAGGTGAGCGAAGTTATCGTAGCTACCAATGCCACAGCAGATGGGGAAGCAACGTCCATGTATATTTCACGTGTCTTG
AAACCAGCCGGGATTAAGGTAACTCGTTTGGCAAGAGGTCTCGCAGTAGGTTCAGATATTGAGTATGCTGATGAAGTAAC
ATTATTGAGAGCTATTGAGAATCGTACTGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

88.384

100

0.884
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.769

98.485

0.5