Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DQM37_RS06900 Genome accession   NZ_LS483394
Coordinates   1353439..1354473 (-) Length   344 a.a.
NCBI ID   WP_010922583.1    Uniprot ID   A0A0H2UWB0
Organism   Streptococcus pyogenes strain NCTC10880     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348439..1359473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM37_RS06865 (NCTC10880_01371) - 1349215..1349517 (-) 303 WP_002983488.1 YlxQ-related RNA-binding protein -
  DQM37_RS06870 (NCTC10880_01372) rnpM 1349510..1349806 (-) 297 WP_002983486.1 RNase P modulator RnpM -
  DQM37_RS06875 (NCTC10880_01373) nusA 1349822..1350979 (-) 1158 WP_002994325.1 transcription termination factor NusA -
  DQM37_RS06880 (NCTC10880_01374) rimP 1351154..1351690 (-) 537 WP_002988815.1 ribosome maturation factor RimP -
  DQM37_RS06890 (NCTC10880_01376) trmB 1351949..1352584 (-) 636 WP_111694937.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DQM37_RS06895 (NCTC10880_01377) ccrZ 1352584..1353375 (-) 792 WP_002983385.1 cell cycle regulator CcrZ -
  DQM37_RS06900 (NCTC10880_01378) pptB 1353439..1354473 (-) 1035 WP_010922583.1 ABC transporter permease Regulator
  DQM37_RS06905 (NCTC10880_01379) pptA 1354476..1355201 (-) 726 WP_002983379.1 ABC transporter ATP-binding protein Regulator
  DQM37_RS06910 (NCTC10880_01380) - 1355273..1355692 (+) 420 WP_002983376.1 HIT family protein -
  DQM37_RS06915 (NCTC10880_01381) - 1355689..1356045 (+) 357 WP_002988657.1 hypothetical protein -
  DQM37_RS06920 (NCTC10880_01382) brpA 1356155..1357429 (-) 1275 WP_111694938.1 biofilm formation/cell division transcriptional regulator BrpA -
  DQM37_RS06925 (NCTC10880_01383) - 1357438..1357962 (-) 525 WP_009880752.1 GNAT family N-acetyltransferase -
  DQM37_RS06930 (NCTC10880_01384) tsaE 1357937..1358398 (-) 462 WP_009880751.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40274.52 Da        Isoelectric Point: 10.3713

>NTDB_id=1022720 DQM37_RS06900 WP_010922583.1 1353439..1354473(-) (pptB) [Streptococcus pyogenes strain NCTC10880]
MKALFLKRRQDFQKQQNKYLRYVLNDHFVLVLMFLLGFAMVQYGQLLNHFPTNHLPIQVCLGILIPLLLSMGSIATYLEE
ADQHFLLPKEEEVISYIKQAERLSFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLILLALKRVVLSRKTRYFLRGNR
LDWAKAVAFESNRKQSILKFYSLFTTVKGISTKVKERTYLNPLLKLVKQTPSNLWLSLYARAFLRSSDYLGLFLRLMLLS
SLSVFFIHNLYLSVSLALIFNYLVVFQLLSLYYHYDYHYMTSLYPENSRSKKKNMLSFLRGLSFLMLIVNMLCCSSAPKA
LILIVGMVFIACIYLPYKLKKIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1022720 DQM37_RS06900 WP_010922583.1 1353439..1354473(-) (pptB) [Streptococcus pyogenes strain NCTC10880]
ATGAAAGCATTATTTCTGAAACGCCGTCAAGACTTTCAAAAACAACAAAACAAATACCTTCGTTACGTCTTAAATGATCA
CTTTGTTTTGGTGTTGATGTTTTTATTAGGCTTTGCTATGGTGCAGTATGGTCAGCTACTAAACCATTTTCCAACGAATC
ATCTACCTATTCAGGTTTGTCTTGGGATATTGATCCCATTATTGCTCAGTATGGGATCTATAGCAACGTATCTAGAAGAG
GCAGATCAACATTTCTTACTTCCAAAAGAAGAAGAAGTGATTTCTTATATCAAACAAGCTGAGCGACTCTCTTTTTTGCT
TTGGGGAACTTTGCAGACTGCTGTATTGCTCTTTTTATATCCTATTTTTAGACGTCTAGGTCTGTCTTTATTTATTTTTA
TTATCTTAGTTTTGATATTATTGGCACTAAAAAGAGTAGTGCTTAGTCGAAAGACAAGATATTTTTTGAGAGGAAATCGT
TTAGATTGGGCAAAAGCTGTCGCATTTGAAAGCAATCGCAAGCAAAGTATTTTAAAGTTTTATTCTCTTTTTACAACAGT
CAAAGGAATTTCTACAAAAGTGAAAGAAAGAACTTATCTAAATCCTCTTTTAAAATTAGTTAAGCAAACTCCTTCAAACC
TTTGGCTGTCCCTTTATGCTAGAGCCTTTTTACGTAGTTCAGATTATTTGGGCTTATTTTTACGACTAATGCTATTAAGC
TCATTATCTGTATTTTTTATCCATAATCTTTATTTGTCAGTAAGTTTAGCACTCATTTTTAACTATTTAGTTGTATTCCA
ATTACTTTCACTTTATTATCACTACGATTACCATTATATGACTAGTCTTTATCCTGAAAATAGTCGGAGCAAGAAGAAAA
ATATGTTAAGTTTTTTACGAGGTTTAAGCTTTTTAATGTTAATCGTCAATATGCTGTGTTGCTCATCAGCGCCAAAAGCA
CTCATTTTGATTGTAGGTATGGTTTTCATAGCTTGTATATATCTACCTTATAAGTTAAAGAAGATCATTGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(2-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.023

100

0.43
  pptB Streptococcus salivarius strain HSISS4

42.733

100

0.427