Detailed information NTG1022708

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DMB79_RS06150
• Genome accession: NZ_CP161828
• Coordinates: 1351370..1352215 (+)
• Length: 281 a.a.
• NCBI ID: WP_102119278.1
• Uniprot ID: A0AA93AP25
• Organism: Pectobacterium aquaticum strain A101-S19-F16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1346370..1357215

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DMB79_RS06120 (DMB79_000006120)	gspI	1346781..1347146 (+)	366	WP_039284733.1	type II secretion system minor pseudopilin GspI	-
DMB79_RS06125 (DMB79_000006125)	gspJ	1347146..1347796 (+)	651	WP_102119273.1	type II secretion system minor pseudopilin GspJ	-
DMB79_RS06130 (DMB79_000006130)	gspK	1347793..1348779 (+)	987	WP_102119274.1	type II secretion system minor pseudopilin GspK	-
DMB79_RS06135 (DMB79_000006135)	gspL	1348776..1350053 (+)	1278	WP_116156172.1	type II secretion system protein GspL	-
DMB79_RS06140 (DMB79_000006140)	gspM	1350050..1350544 (+)	495	WP_116186621.1	type II secretion system protein GspM	-
DMB79_RS06145 (DMB79_000006145)	-	1350534..1351280 (+)	747	WP_116156174.1	type II secretion system protein N	-
DMB79_RS06150 (DMB79_000006150)	pilD	1351370..1352215 (+)	846	WP_102119278.1	A24 family peptidase	Machinery gene
DMB79_RS06155 (DMB79_000006155)	-	1352355..1352414 (-)	60	WP_226373383.1	membrane protein YpdK	-
DMB79_RS06160 (DMB79_000006160)	-	1352815..1352969 (-)	155	Protein_1182	LLM class flavin-dependent oxidoreductase	-
DMB79_RS06165 (DMB79_000006165)	dbpA	1353138..1354520 (+)	1383	WP_116186620.1	ATP-dependent RNA helicase DbpA	-
DMB79_RS06170 (DMB79_000006170)	-	1354581..1355153 (+)	573	WP_102119280.1	alpha/beta hydrolase	-
DMB79_RS06175 (DMB79_000006175)	-	1355258..1355797 (-)	540	WP_116186619.1	hypothetical protein	-
DMB79_RS06180 (DMB79_000006180)	-	1356319..1356585 (+)	267	WP_116156175.1	hypothetical protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31421.29 Da
• Isoelectric Point: 7.0817

>NTDB_id=1022708 DMB79_RS06150 WP_102119278.1 1351370..1352215(+) (pilD) [Pectobacterium aquaticum strain A101-S19-F16]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRKDIELETGMDDSDRDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEAIAMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLSALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEEANKPLAFGPWLAIGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=1022708 DMB79_RS06150 WP_102119278.1 1351370..1352215(+) (pilD) [Pectobacterium aquaticum strain A101-S19-F16]
GTGGACGATTTAAGGGAATTCGCACAACTTTTTCCGGCGTGGTGGTTTGGGGCACTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGTTTGCCGATTATGCTGGAACGTCGCTGGCGGAAGGACATCGAGCTTGAAACGG
GCATGGACGATTCCGATCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGTTGGCTGTGGCTGCGTGGCCGCTCCCGTTGCTGTCATCAATCGGTCTCTGT
GCAATATCCTCTGGTGGAAGCGATCGCCATGCTGGCTTTTCTGACGGCGGGTTTGCTCTGGCTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCCTTCCTGTTGGTGCTGACCGTGATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGTTGCTGTTTAATCTGTCGGGGACATTTGTTTCATTGAACGATGCCGTAGTCGGCGC
GATGGCTGGTTATTTATCTCTGTGGCTACTTTATTGGGCATTCAAATACGCAACGGGCAAAGAAGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGTCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCAGCGTTGAGC
GGTCTGGTCGTTACTCTCATTTGGCGAGGATTACGTAAAGAAGAGGCGAATAAACCGCTGGCCTTTGGACCCTGGCTGGC
AATCGGCGGCGTGTTTGGCGTGATAATGAACGGATTCAATTTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.185	96.441	0.484
pilD	Vibrio campbellii strain DS40M4	45.926	96.085	0.441
pilD	Neisseria gonorrhoeae MS11	45.594	92.883	0.423
pilD	Acinetobacter baumannii D1279779	42.857	97.153	0.416
pilD	Acinetobacter nosocomialis M2	42.222	96.085	0.406