Detailed information NTG1022633

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB1E37_RS20960
• Genome accession: NZ_CP161823
• Coordinates: 4267562..4268362 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella sp. Shm-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4262562..4273362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1E37_RS20925	gspH	4262718..4263233 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AB1E37_RS20930	gspI	4263230..4263595 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB1E37_RS20935	gspJ	4263592..4264188 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
AB1E37_RS20940	gspK	4264185..4265171 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
AB1E37_RS20945	gspL	4265158..4266351 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
AB1E37_RS20950	-	4266344..4266829 (+)	486	WP_117116837.1	type II secretion system protein M	-
AB1E37_RS20955	-	4266819..4267565 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB1E37_RS20960	pilD	4267562..4268362 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AB1E37_RS20965	hrpB	4268410..4270839 (-)	2430	WP_032448271.1	ATP-dependent helicase HrpB	-
AB1E37_RS20970	thpR	4270912..4271448 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB1E37_RS20975	sfsA	4271448..4272164 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB1E37_RS20980	dksA	4272327..4272782 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1022633 AB1E37_RS20960 WP_002888947.1 4267562..4268362(+) (pilD) [Klebsiella sp. Shm-1]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1022633 AB1E37_RS20960 WP_002888947.1 4267562..4268362(+) (pilD) [Klebsiella sp. Shm-1]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425