Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB1395_RS08190 Genome accession   NZ_CP161815
Coordinates   1619471..1619959 (-) Length   162 a.a.
NCBI ID   WP_104968488.1    Uniprot ID   A0A2L0D669
Organism   Streptococcus pluranimalium strain SS-15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1614471..1624959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1395_RS08170 (AB1395_08170) - 1615516..1616187 (+) 672 WP_218653641.1 DUF1129 domain-containing protein -
  AB1395_RS08175 (AB1395_08175) - 1616333..1617625 (-) 1293 WP_218653643.1 CitMHS family transporter -
  AB1395_RS08180 (AB1395_08180) - 1617635..1618636 (-) 1002 WP_367783229.1 isocitrate/isopropylmalate dehydrogenase family protein -
  AB1395_RS08185 (AB1395_08185) rpsR 1619194..1619433 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  AB1395_RS08190 (AB1395_08190) ssb 1619471..1619959 (-) 489 WP_104968488.1 single-stranded DNA-binding protein Machinery gene
  AB1395_RS08195 (AB1395_08195) rpsF 1619971..1620261 (-) 291 WP_104968489.1 30S ribosomal protein S6 -
  AB1395_RS08205 (AB1395_08205) - 1621727..1622134 (+) 408 WP_218653645.1 hypothetical protein -
  AB1395_RS08210 (AB1395_08210) mutY 1622190..1623338 (+) 1149 WP_218653646.1 A/G-specific adenine glycosylase -
  AB1395_RS08215 (AB1395_08215) - 1623370..1624011 (-) 642 WP_218653647.1 HAD family phosphatase -
  AB1395_RS08220 (AB1395_08220) - 1624173..1624299 (-) 127 Protein_1558 aldo/keto reductase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17971.63 Da        Isoelectric Point: 4.7187

>NTDB_id=1022609 AB1395_RS08190 WP_104968488.1 1619471..1619959(-) (ssb) [Streptococcus pluranimalium strain SS-15]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSQSSYNGGGYNNQSSNDAFSSSSQTPNFGRDESPFGNSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1022609 AB1395_RS08190 WP_104968488.1 1619471..1619959(-) (ssb) [Streptococcus pluranimalium strain SS-15]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCAGAGATGCAGAACTTCGTTACACGCCGAGCAATGTAGCAGTAGC
TACTTTCTCTCTTGCAGTTAACCGTAACTTCAAGAGTCAAAACGGTGAACGTGAAGCTGATTTCATTAATTGTGTGATTT
GGCGCCAGCCAGCTGAGAATTTGGCTAACTGGGCTAAAAAAGGTGCCTTAATCGGTATCACTGGACGTATTCAGACACGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAAGTTGTTGCGGATAATTTCCAAATGTTGGAAAGCCGTGC
TACACGTGAAGGTGGTTCACAAAGTTCATACAATGGTGGTGGCTATAATAACCAATCATCAAACGATGCTTTCTCATCTT
CATCACAAACACCAAACTTTGGTCGAGACGAGAGCCCGTTTGGTAACTCAAACCCAATGGATATCTCAGATGACGATCTA
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0D669

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.599

Multiple sequence alignment